Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0647 ATGGAAGCTTTCAACAGAACCTCCTCCACCGCCTCTTCTTCCTCTGACTCTTCCTCTTCCGACTCCAACCACAACAACCCCCACAGAATCAAAGGCCCATGGAGCGCCGAGGAGGATCGGATCCTCACCCGCCTCGTCGACCGATACGGACCCCGGAACTGGTCCCTCATCAGCCGCTACATTAAGGGGAGGTCTGGCAAGTCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGCCCCTTCTCTCCCCAAGAGGACGACACCATCATCGCCGCCCACGCCCAGTATGGTAACAGGTGGGCCACCATTGCCCGTTTGCTACCGGGCCGAACCGATAACGCCGTCAAGAACCACTGGAACTCCACGCTCAAGCGCAGGGCCAAGGCTCTTCTTGACATTAATGTTAATAATAATGCCAGCAGCGAAGGAGCCACTTCTTCTGCTCCTTCTCGCTCCTTCGAGGATGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTATCTCTAACGCTTCCGTGGCCGAGGACGCCGTGCTGGACCACCGGGCTTCGCCGGAGAATGCGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCGAGAGAAGTGAGGGAATATGTGTCTTCCAGTTTTTCTGATAACTCGAACTTTCATTAA 675 0.5793 MEAFNRTSSTASSSSDSSSSDSNHNNPHRIKGPWSAEEDRILTRLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKALLDINVNNNASSEGATSSAPSRSFEDDPLTALTLAPPGISNASVAEDAVLDHRASPENAPAGFWDMMRDVIAREVREYVSSSFSDNSNFH* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0647 224 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Pvu9g0647 224 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Pvu9g0647 224 SMART sant 82 130 IPR001005 -
Pvu9g0647 224 SMART sant 30 79 IPR001005 -
Pvu9g0647 224 CDD SANT 85 128 IPR001005 -
Pvu9g0647 224 PANTHER MYB TRANSCRIPTION FACTOR 2 210 - -
Pvu9g0647 224 MobiDBLite consensus disorder prediction 144 165 - -
Pvu9g0647 224 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Pvu9g0647 224 PANTHER MYB PROTEIN-RELATED 2 210 - -
Pvu9g0647 224 MobiDBLite consensus disorder prediction 144 158 - -
Pvu9g0647 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Pvu9g0647 224 CDD SANT 33 75 IPR001005 -
Pvu9g0647 224 Gene3D - 84 155 - -
Pvu9g0647 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Pvu9g0647 224 Gene3D - 30 82 - -
Pvu9g0647 224 Pfam Myb-like DNA-binding domain 34 91 - -
Pvu9g0647 224 MobiDBLite consensus disorder prediction 1 34 - -
Pvu9g0647 224 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0647 Pvu-Chr9 10947123 10947797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0647 29 132 MYB Transcription Factor Family AT3G50060 76.923 6.21e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu9g0647 Myb_DNA-bind_6 2.5e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0647 9 10947123 10947797 Pvu9g0647 9 10947123 10947797 ECH
Pvu1g0197 1 1641533 1642109 Pvu9g0647 9 10947123 10947797 PCT