Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0625 ATGCTTATGGCTCTTCCGAGGCATAATAATGCGTTTCCTGAGGCCTTGGGAGCATTTCCTAGCATTGGAATGGCTGAGGGCTCTGAGATAAGCCACCCAAGGCATTTTATGGATCTTCTAGGAGCAGCTAATGAGAGCAATCACCACCAACCTCAAGGGCTTTCCCTCTCTTTAGGCTCTCACATGCTTATTCCTTCTGATGAATACAGGCATCATCAGAGACCCTTGAACACTGGTCTCATCAACCCCAATTTCTTCATGCCTGGACAAGAGGCACGTGTGGCCTGTAATCCACCCGTGGAGCATCTTACTAGTGACTACTTTTTCAACACTGACACTGGCACTAACACTTTTGTCTCCTCTTCTTCTGCCCCTTTGAACCGGTCTCCTAATTCCACACCTTATGCTCCTCCTGAGTCTTTTGCTTCTGTCATTGGAAACTCGAGGTACCTCAAACCGGTACAGTCCCTTCTTGAAGATCTTGTTGACGTTGGTGGAAATGTGGTGGATAGAATCAATGAAAAGTATGTTGAGAAGATGTTACACGGGAGTAGAGGTGTTAGGATACTTTCCTCAGAGTTGAAGGCAGAGTTGAGGAATAATGGACCTTTATTAGCTGATAAACATGAACATCACATCAAAATTGCAAGGTTGATATCTTTGTTGGATAAGGCTGAGGGAAGGTGTGAGAAATATTATCATCAAATGGAAGAAGTGGTGTCATCCTTTGAAATGATAGCAGGTTTGGGAGCTGCCAAGTGTTACACTGCTTTGGCACTTCAAGCCATGTCAAGGCATTTTTGTAGCTTGAGAGAAGCCATATTGTCGCAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATTAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACATTAGACATAGTAGAATGTCTCTCCAACAACTTGGGGTGATTCAAAGCCAGCGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGTTCGTGGATTTTTGAGCATTTTCTCCACCCTTACCCTAATGATTCTGAAAAGCTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGATGAGTTTGGGGAGTCTTCTGAAGACTCCAACCCCGCTGCTAACAATTGCTTGACGAGAGAAGATACCACAGATTGTGTAGAGGATTGA 1269 0.435 MLMALPRHNNAFPEALGAFPSIGMAEGSEISHPRHFMDLLGAANESNHHQPQGLSLSLGSHMLIPSDEYRHHQRPLNTGLINPNFFMPGQEARVACNPPVEHLTSDYFFNTDTGTNTFVSSSSAPLNRSPNSTPYAPPESFASVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYVEKMLHGSRGVRILSSELKAELRNNGPLLADKHEHHIKIARLISLLDKAEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLREAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDIRHSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWIFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKDEFGESSEDSNPAANNCLTREDTTDCVED* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0625 422 MobiDBLite consensus disorder prediction 396 422 - -
Pvu9g0625 422 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 24 408 - -
Pvu9g0625 422 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 408 - -
Pvu9g0625 422 SMART HOX_1 326 390 IPR001356 GO:0003677
Pvu9g0625 422 Pfam Homeobox KN domain 343 382 IPR008422 GO:0003677|GO:0006355
Pvu9g0625 422 Gene3D - 321 401 - -
Pvu9g0625 422 SUPERFAMILY Homeodomain-like 332 394 IPR009057 -
Pvu9g0625 422 CDD homeodomain 326 387 IPR001356 GO:0003677
Pvu9g0625 422 ProSiteProfiles 'Homeobox' domain profile. 345 386 IPR001356 GO:0003677
Pvu9g0625 422 SMART prehox3 139 276 IPR006563 -
Pvu9g0625 422 Pfam Associated with HOX 144 274 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0625 Pvu-Chr9 10744075 10746611 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu9g0625 POX 3.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0625 9 10744075 10746611 Pvu9g0625 9 10744075 10746611 ECH
Pvu9g0625 9 10744075 10746611 Pvu1g0114 1 970564 975343 PCT