Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0624 ATGCCTTCAACTGCATCTGTCTCGCCATTTCAATACCAATATCACGACACTGGTCTCTTACCTCTAATGACTGATTTTTCAAACCCAAAGGGAACTTTGTCTCTCAAAGATGATGATGCTTATAACCTACGTGAAGATTTTAGAAGTGATGGATGCATGGGATCTGTGTCTTCTGGAGGCTTTCATGAGATTATAAAAAAGGAGAGTTTTTACAGCCCCCACCCCTCAATGTGTCTTAAAGAAGTCCCCTCCGATCTGCCGGGTTACTCCAACAGTATTTTAAACTCCCAATACCTTAGGGCGGCACAAGAGTTGCTTGATGAAATAGTTAGTGTCCGAAAGGCTTTGAAGCAACCTGGAATGGAAAAACAAGAGAACCACCGTGACATTGGATTAGATGGCTCTAAAAATTCTTATGAAAAATCTACCCAAATGTCTTCAGCTCCTAATGGTGAACTATCATCTGCAGAACGGCAGAACTTGTTAGATAAGAAAACAAAGCTTTTATCCATGCTGGATGAGGTGGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGGTTTGGAGCAGTAGAACCATATACAGCACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGTCCAAATTCAAGTGACGCAAAGGAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTCAGACAACAAAAGGCCCTTCAGCAACTTGGCGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGTTCTGTTTCAATACTTCGTGCTTGGCTCTTCGAACATTTTCTTCATCCTTATCCCAAGGATTCCGAGAAAATTATGCTGGCTAGACAAACAGGCTTGACCAGAAACCAGGTAGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAACGAAGAGTTTGGAGATTTCGAGATGAACTGCAACCTTTCATCTGAGAACACGGTCAAAGGTAAGAGGGATGATGTTCAAGAGTCTGATAGCAATTTAGTAACTGTTGATAATGCCCAACCCCAACCTCTAGCCGAACTGGATAGGGGGGTCAACGCAGAAAATATGGTGATGCATTCTGGAACTGAGAAATTGCAGGGTGACCAGAACCTAAGGCTTGGCATGAATAACATTAACAGCAGCAGCAACAACAACCTTCATTCTATCTCGACAAATCCGAACGGTGGCTACGGGAGCCTAATAGGTTCTAGTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGAGGCCACGTTTCGCTTGCATTGGAGTTGAGGAACTGTGAAAGTGATGGGTTTTCCATGTCTGAGGATGCCATCCACAAACGAGGTAATCAAACATTGGCCTCTTCCCCGGAGACTGATTTACTAGATTATCATTTCACGGATTCAGGAAAGCAACAACACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGA 1557 0.4412 MPSTASVSPFQYQYHDTGLLPLMTDFSNPKGTLSLKDDDAYNLREDFRSDGCMGSVSSGGFHEIIKKESFYSPHPSMCLKEVPSDLPGYSNSILNSQYLRAAQELLDEIVSVRKALKQPGMEKQENHRDIGLDGSKNSYEKSTQMSSAPNGELSSAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGFGAVEPYTALALRTISRHFRCLRDAISVQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYNEEFGDFEMNCNLSSENTVKGKRDDVQESDSNLVTVDNAQPQPLAELDRGVNAENMVMHSGTEKLQGDQNLRLGMNNINSSSNNNLHSISTNPNGGYGSLIGSSHATYDLSELGNFTVGGHVSLALELRNCESDGFSMSEDAIHKRGNQTLASSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0624 518 Gene3D - 264 340 - -
Pvu9g0624 518 Pfam Associated with HOX 93 225 IPR006563 -
Pvu9g0624 518 SMART prehox3 87 226 IPR006563 -
Pvu9g0624 518 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 485 - -
Pvu9g0624 518 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 1 485 - -
Pvu9g0624 518 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677|GO:0006355
Pvu9g0624 518 MobiDBLite consensus disorder prediction 120 156 - -
Pvu9g0624 518 SMART HOX_1 267 331 IPR001356 GO:0003677
Pvu9g0624 518 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677
Pvu9g0624 518 CDD homeodomain 267 328 IPR001356 GO:0003677
Pvu9g0624 518 MobiDBLite consensus disorder prediction 120 135 - -
Pvu9g0624 518 MobiDBLite consensus disorder prediction 136 156 - -
Pvu9g0624 518 SUPERFAMILY Homeodomain-like 268 335 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0624 Pvu-Chr9 10737870 10742757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu9g0624 POX 6.3e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0624 9 10737870 10742757 Pvu9g0624 9 10737870 10742757 ECH
Pvu1g0114 1 970564 975343 Pvu9g0624 9 10737870 10742757 PCT
Pvu9g0624 9 10737870 10742757 Pvu1g0115 1 981656 986342 PCT