Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0145 ATGAAGATCCAGTGCGACGTGTGTAACAAACACCAGGCTTCTTTATTCTGCACCGCTGATGAGGCCGCCCTCTGCGACGCCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTCACCCACCCCTCTGCTAAGCATTTTCCTCTCTGTGATGTTTGCCAGGAGAGAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGGCTCCATTCATTCGGCCAACGAACTCACCAAGAACCATAGCAGGTTTCTCCTCACCGGGATCAAGTTCTCTGCTTCTCTCCTGCCTTATTCTTCTTCTTCTTCACTATCATCATCATCATCACCCAAGAAAAACCCTGTTCTCGATTCTTCACACCCACTTTCCAATCCTCCTTCAACACCCTCACCGCCTAAACCTGGGGGAAACTTGCAAACAAATCAAGAACCTGGTTTCACAGGTAGCAGCATATCAGAGTACTTGATAAACACTATCCCGGGCATGAAGTTCGAAGACTTCCTCGATTCCCATTCAACCTTTGCTTGCTCTAAGAACGGTGATGAGATGTGTTCGCTGTTTGGTGAGGAAAACATGGTTTCGTTCTCCCCTGGTGGGATCTGGGTTCCTCAAGCGCCACCTTCTTCTGCTGCATATTGGGAACAGACGAGTGAGCAGAATGGATACAAGGAGAGAAGGGAAGGTAGCATTAGATCAAGTTTGGGGGATGATAACTTCGTGGTTCCTCAGATGAGTCCTCCCAGCAACGTTTCCAAGAGATCCAAGGTTCTTTGGTAG 819 0.4908 MKIQCDVCNKHQASLFCTADEAALCDACDHRVHHANKLASKHQRFSLTHPSAKHFPLCDVCQERRAFVFCQQDRAILCKECDGSIHSANELTKNHSRFLLTGIKFSASLLPYSSSSSLSSSSSPKKNPVLDSSHPLSNPPSTPSPPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFACSKNGDEMCSLFGEENMVSFSPGGIWVPQAPPSSAAYWEQTSEQNGYKERREGSIRSSLGDDNFVVPQMSPPSNVSKRSKVLW* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0145 272 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pvu9g0145 272 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu9g0145 272 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu9g0145 272 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pvu9g0145 272 MobiDBLite consensus disorder prediction 250 266 - -
Pvu9g0145 272 MobiDBLite consensus disorder prediction 115 158 - -
Pvu9g0145 272 CDD Bbox1_BBX-like 5 47 - -
Pvu9g0145 272 MobiDBLite consensus disorder prediction 228 272 - -
Pvu9g0145 272 Gene3D Classic Zinc Finger 1 97 - -
Pvu9g0145 272 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 269 - -
Pvu9g0145 272 CDD Bbox1_BBX-like 57 100 - -
Pvu9g0145 272 MobiDBLite consensus disorder prediction 115 137 - -
Pvu9g0145 272 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Pvu9g0145 272 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pvu9g0145 272 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0145 Pvu-Chr9 2246018 2247600 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu9g0145 zf-B_box 1.1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0145 9 2246018 2247600 Pvu11g0400 11 3376440 3378947 ECH
Pvu9g0145 9 2246018 2247600 Pvu9g0145 9 2246018 2247600 ECH
Pvu1g0100 1 827263 828881 Pvu9g0145 9 2246018 2247600 PCT