Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0044 ATGAAGATCCAGTGTGACGTGTGTGACAAAATGGAAGCCACTGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCGTAGCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGCTTCCCTCTCATCTTCCCCACCTCCCAAGACTTCCCTCTTTGTGATATCTGCCAAGAGAAGCGTGCATATCTATTTTGCCAAGAGGACAGGGCATTGCTGTGCAGGGAATGTGACCTTCCAATCCACAGAGCGAATGAGCATACGCAGAAGCATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCGGCCACTTCTTTGGATTCTGCTTCCTCTTCCACCAATTGCACCGATACAGTCACTGCCTCTGAAGGAAAAAACGGTCGATCTAGAACCAACAGACCCAGATCAATTTCCCATGAAAATCTCACCTCTTCTTGGAAGGCTGAAGACAACGTGGGCAGCGACACTGGTTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTTGCACCTACTAATGGTTTCTGTAAGAAGCAGAACCATGATCATCGTTGGGCGTTTCAGAACCAAGATCTAGTTCAACTTAGGACGTGTTTGGTTGGAGTTAAGGAAATTCCAAATGGGGGATGTTATGGTTGTGCCGTTCCTTAA 711 0.4768 MKIQCDVCDKMEATVFCPADEAALCRSCDRTIHHANKLATKHPRFPLIFPTSQDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSATSLDSASSSTNCTDTVTASEGKNGRSRTNRPRSISHENLTSSWKAEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPTNGFCKKQNHDHRWAFQNQDLVQLRTCLVGVKEIPNGGCYGCAVP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0044 236 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 - -
Pvu9g0044 236 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 207 - -
Pvu9g0044 236 MobiDBLite consensus disorder prediction 111 131 - -
Pvu9g0044 236 MobiDBLite consensus disorder prediction 140 161 - -
Pvu9g0044 236 MobiDBLite consensus disorder prediction 111 161 - -
Pvu9g0044 236 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pvu9g0044 236 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu9g0044 236 CDD Bbox1_BBX-like 5 47 - -
Pvu9g0044 236 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pvu9g0044 236 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu9g0044 236 Gene3D Classic Zinc Finger 1 99 - -
Pvu9g0044 236 CDD Bbox1_BBX-like 57 100 - -
Pvu9g0044 236 SUPERFAMILY B-box zinc-binding domain 50 91 - -
Pvu9g0044 236 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Pvu9g0044 236 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0044 Pvu-Chr9 811932 813556 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu9g0044 zf-B_box 1.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0044 9 811932 813556 Pvu9g0044 9 811932 813556 ECH
Pvu9g0044 9 811932 813556 Pvu3g2678 3 48801087 48803925 ECH
Pvu9g0044 9 811932 813556 Pvu2g1150 2 22653997 22656628 ECH