Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2480 AACCGTTGCGTTAACATGATAGCTCACCTTTTCAATGCACCACTCGAAGACTCAGAAATTGCAGTTGGTGTTGGTACTGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAAGAACAAGGGAAGTCTTGTGATAGTCCCAACATTGTTACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCGAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGAGCGATGGATACTTTGTAATGGACCCTGATAAAGCAGCGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTTTGAACGGAGAGTTTGAAGATGTGAAGCGCTTAAATGATCTGCTAGTACAAAAGAATCAGGAAACTGGATGGGACACTCCAATTCACGTGGATGCAGCCAGTGGTGGATTCATTGCACCCTTTATTTATCCAGAGCTTGAATGGGACTTTCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTGATTTGGAGAACCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAATTATTGCTCAGTACTACCAACTAATTCGATTAGGTTATGAGGGATATAAAATGGTGATGGAAAACTGCAGAGACAACATGGGAGTGCTTAAGGAAGGACTAGAGGGAACTGGAAGGTTTAACATTGTGTCTAAAGATATTGGTGTCCCATTGGTGGCCTTCACTTTGAAGGAGCACAGCCACTTCAATGAGTTCCAAATCTCTGACCTGCTGAGGCGCTATGGATGGATAGTGCCAGCATACACTATGCCCCCAGATGCAGAACATGTCACAGTGCTTCGTGTTGTGGTTAGGGAGGACTTTTCTCGCACCCTTGCGGAGCGTCTTGTCAATGATATCACTAAAGTGGTGCACGAGCTGGAGCAGCTTCCTGCTAGGGTAATCAGCAGCGTAACGTCTACTGGAGAAGAAGGTGAAGACGCTGAGAGCAAAGTATTGCTTGCCAAGAAGAGTGAACTAGAGACGCAGAGGGAAATCACATCAGTTTGGAAGAAGTTTGTTATGGACAAGAAGAAGATGAATGGCGTCTGTTAG 1215 0.4535 NRCVNMIAHLFNAPLEDSEIAVGVGTVGSSEAIMLAGLAFKRRWQNRRKEQGKSCDSPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYFVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVQKNQETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYKMVMENCRDNMGVLKEGLEGTGRFNIVSKDIGVPLVAFTLKEHSHFNEFQISDLLRRYGWIVPAYTMPPDAEHVTVLRVVVREDFSRTLAERLVNDITKVVHELEQLPARVISSVTSTGEEGEDAESKVLLAKKSELETQREITSVWKKFVMDKKKMNGVC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2480 404 PANTHER GLUTAMATE DECARBOXYLASE 1 404 - -
Pvu8g2480 404 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 348 IPR010107 GO:0004351|GO:0006536|GO:0030170
Pvu8g2480 404 Gene3D - 264 351 - -
Pvu8g2480 404 SUPERFAMILY PLP-dependent transferases 1 348 IPR015424 -
Pvu8g2480 404 Gene3D - 1 262 IPR015421 GO:0003824
Pvu8g2480 404 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 284 IPR002129 GO:0016830|GO:0019752|GO:0030170
Pvu8g2480 404 PANTHER GLUTAMATE DECARBOXYLASE 1 404 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2480 Pvu-Chr8 55396605 55399774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2480 1 404 Calmodulin-binding Proteins AT5G17330 80.296 0.0 688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2480 8 55396605 55399774 Pvu8g2480 8 55396605 55399774 ECH
Pvu6g0918 6 20637379 20644075 Pvu8g2480 8 55396605 55399774 PCT