Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2441 ATGGCCACTGAGGAGGTTAGCAAACCTCAGTCACTTCCTCCATACCCCGAGCTGATACTGAAAGCACTAGAAGCTCTGAACGAACCAGGTGGATCCAGCAAATCAGCAATATCAAAGTACATAGAATCGACCTATGGTGAGTTGCCGGACTCAACTGTTTTGGATAATCATCTGAACAAGATGAAAGACAGTGGAGAGCTTGTGTTCAGCAAGAACAACTTCATGAAGCCTGACCCAAGTGCTCCACCAAAGAGGGGCCGTGGAAGGCCACCAAAGCCAAAGGCCCCTGTCTCACCAGGCACCGTGGTCTCCCCTCCAAGGCCAAGGGGTCGTCCCCCAAAGGACCCTAATGCCCCTCCAAAGTCCCCAAAGCCTAAAGCCACCCCTGGAAGTGGCAGGCCAAGAGGCAGACCAAAGAAGATTCCTCGATCTCCGACAGCGGCGTATCCGGCCGCCGTATCGAGCGGAAGGCCGAGGGGTAGGCCTCCTAAGGTGAAGCCTCAGTTGACAGAAGTGAGTGTTGAGTCATAG 531 0.5405 MATEEVSKPQSLPPYPELILKALEALNEPGGSSKSAISKYIESTYGELPDSTVLDNHLNKMKDSGELVFSKNNFMKPDPSAPPKRGRGRPPKPKAPVSPGTVVSPPRPRGRPPKDPNAPPKSPKPKATPGSGRPRGRPKKIPRSPTAAYPAAVSSGRPRGRPPKVKPQLTEVSVES* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2441 176 MobiDBLite consensus disorder prediction 64 176 - -
Pvu8g2441 176 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677
Pvu8g2441 176 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Pvu8g2441 176 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Pvu8g2441 176 Pfam linker histone H1 and H5 family 13 68 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu8g2441 176 SUPERFAMILY "Winged helix" DNA-binding domain 8 85 IPR036390 -
Pvu8g2441 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu8g2441 176 PANTHER HMG-Y-RELATED PROTEIN A 1 172 IPR031059 GO:0003677|GO:0005634
Pvu8g2441 176 SMART h15plus2 9 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu8g2441 176 MobiDBLite consensus disorder prediction 92 127 - -
Pvu8g2441 176 Gene3D - 7 88 IPR036388 -
Pvu8g2441 176 PRINTS High mobility group protein (HMGY) signature 82 94 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu8g2441 176 PRINTS High mobility group protein (HMGY) signature 97 108 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu8g2441 176 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu8g2441 176 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu8g2441 176 PANTHER HISTONE H1 1 172 - -
Pvu8g2441 176 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Pvu8g2441 176 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Pvu8g2441 176 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Pvu8g2441 176 SMART AT_hook_2 156 168 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2441 Pvu-Chr8 55006028 55007366 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2441 8 55006028 55007366 Pvu8g2441 8 55006028 55007366 ECH
Pvu1g2381 1 49154554 49155574 Pvu8g2441 8 55006028 55007366 PCT