Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1019 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAGCCAAATCATCAGCAGCAAGGCAACAACACTGCTGTCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCTCCACCATCACAACCTCATGGACTCGGTGGCAGTGCCACCGCCGGCTCCATAAGGCCAGGTTCCATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCACAGAAGTGTCCAAGATGTGAATCCGCCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACTCGTGGCGGAGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGAAACAGCGCCAGGTCGCCGGCAAACTCCGATCGCCAAACGGCGAGTGCCGGCTCTGCTTCCACAACCAGTGGCTCCTCTTCTGCTGACATGGTGGCAGGCCTTGGTGGCACTGGTGTTCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGGGATCACCACCTTGGTGTTGGTGGTGGAGGAGAAATAGGGTTAAACTATGGCTTGAACTATGGCGGAATTTCAGGGCCAATGGGAGGAATAGGGGACTTGAATTTTCATATAGGAAGCGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGGATGATGTCTCAGTTTGCTTCTGTGAAAATGGAAGATAATCATCCGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGAGCAATATTGGAATGGTGGTGGTGGTGGTGCCACTTCTGCTTGGACTGATCTTTCAGTCTTTAGCTCCTCTTCCACTACTAGTAACCCACTATAG 1086 0.5157 MVYTSIPAYIDPANWQQQQPNHQQQGNNTAVSSHLILPPPIQPPPPPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAPQKCPRCESANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGNSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHHLGVGGGGEIGLNYGLNYGGISGPMGGIGDLNFHIGSALNGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGMMSQFASVKMEDNHPELGLPRQFLGVNNNPNTNEQYWNGGGGGATSAWTDLSVFSSSSTTSNPL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1019 361 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Pvu8g1019 361 MobiDBLite consensus disorder prediction 128 177 - -
Pvu8g1019 361 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 357 - -
Pvu8g1019 361 MobiDBLite consensus disorder prediction 16 65 - -
Pvu8g1019 361 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
Pvu8g1019 361 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Pvu8g1019 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 357 IPR045174 GO:0003700|GO:0006355
Pvu8g1019 361 MobiDBLite consensus disorder prediction 37 52 - -
Pvu8g1019 361 MobiDBLite consensus disorder prediction 138 174 - -
Pvu8g1019 361 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1019 Pvu-Chr8 10664656 10666281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1019 1 354 C2C2-Dof Transcription Factor Family AT2G37590 42.091 9.34e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu8g1019 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1019 - - gmx:100796820 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1019 8 10664656 10666281 Pvu8g1019 8 10664656 10666281 ECH
Pvu8g1019 8 10664656 10666281 Pvu10g0139 10 2139058 2140753 PCT