Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g0425 | ATGTCTAGCCGAAGATCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCCAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAAGCTGGAATCATTAGGAGCCTACTTAATCAATAA | 279 | 0.4588 | MSSRRSRQHSGSTRISDDQIIELVSKLRQLVPEIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ* | 93 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g0425 | 92 | Coils | Coil | 55 | 75 | - | - | |
Pvu8g0425 | 92 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 4 | 58 | IPR011598 | GO:0046983 | |
Pvu8g0425 | 92 | CDD | bHLH_AtPRE_like | 10 | 75 | - | - | |
Pvu8g0425 | 92 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 18 | 77 | IPR036638 | GO:0046983 | |
Pvu8g0425 | 92 | Pfam | Helix-loop-helix DNA-binding domain | 22 | 59 | IPR011598 | GO:0046983 | |
Pvu8g0425 | 92 | Gene3D | - | 2 | 83 | IPR036638 | GO:0046983 | |
Pvu8g0425 | 92 | PANTHER | TRANSCRIPTION FACTOR PRE | 1 | 90 | IPR044293 | GO:0006355|GO:0040008|GO:0046983 | |
Pvu8g0425 | 92 | PANTHER | TRANSCRIPTION REGULATOR | 1 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g0425 | Pvu-Chr8 | 3604196 | 3606439 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g0425 | 12 | 90 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G39860 | 72.500 | 2.83e-35 | 114 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pvu8g0425 | HLH | 4.4e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g0425 | - | - | gmx:100796852 | 172.555 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu8g0425 | 8 | 3604196 | 3606439 | Pvu8g0425 | 8 | 3604196 | 3606439 | ECH | |
Pvu8g0425 | 8 | 3604196 | 3606439 | Pvu9g1954 | 9 | 28056083 | 28057570 | ECH | |
Pvu2g0912 | 2 | 14290925 | 14292389 | Pvu8g0425 | 8 | 3604196 | 3606439 | ECH | |
Pvu4g0308 | 4 | 2881114 | 2883267 | Pvu8g0425 | 8 | 3604196 | 3606439 | PCT |