Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0406 ATGTCCACTCCCAACGCCCACTCCGACACGGCGCCGCATCCGCGCCCCACCATCACACTCCCTCCGCGTCCCTCCGCGGAAGCCTTTTTCTCCGCCGCCGGCGGCGCTAGCCCCGGTCCCATGACCCTCGTGTCTAGCTTCTTCGGTTCCGATGCCGCCGCCGACTGCCGCTCCTTCTCCCAGCTTCTTGCCGGTGCCATGGCCTCCCCGATGGCCTTCTCCGCCGCCGTGGCCGACAACTCCGGTAAGGACGACGATGGACCCCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTATTCACTGTCCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATATGCACATGCAAGCTGATTACCAGATGCATGCAGTAACAGCTCCTACTGAACCACCTCTACAGCAGCCATCTTTTGCTGTAAATGAAGCTTCGGAGCAGCAAATAGTTTCATCTGTACCAGAAACTAAAAATTCTCAAATGGAAACATCGGATATCTCACAGGTTGATAAGAAATATCAGCTGGTTTCCCAGGCCATTGACAAACCTGCAGATGATGGCTTTAACTGGCGCAAGTATGGGCAGAAACAGGTTAAGGGCAGCGAGTATCCACGAAGCTACTACAAATGTACACATCTGAATTGCGTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATTATCTATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAACTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAAAGTGACCAGACTTCCAATCAAGGGGCACCTAGGCAACTACTACCTGGGTCAACTGAGAGCGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCAGATGACATTGAGCCAAACCCTAAGAGAAGGAATACTGATCTTGCGGTTTCCGAAGTACCTCTTTCTCAGAAGACTGTAACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGGAACCCTCATCCGAGGAGTTATTACAAATGCACAAGCGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAGCATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATACCAATTCAGTGCCATTAAAACCGAGTGTCGTACCACCAGAGAAGCACCCTTTGCTTAAAGATATGGACTTTGGAAATAATGACCGAAGACCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAA 1557 0.4868 MSTPNAHSDTAPHPRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSAAVADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHAVTAPTEPPLQQPSFAVNEASEQQIVSSVPETKNSQMETSDISQVDKKYQLVSQAIDKPADDGFNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDCSVPESDQTSNQGAPRQLLPGSTESEEVGDVDNREEADDIEPNPKRRNTDLAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANTNSVPLKPSVVPPEKHPLLKDMDFGNNDRRPVHLRLKEEQIIV* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0406 518 PANTHER WRKY PROTEIN 10 517 - -
Pvu8g0406 518 Gene3D WRKY domain 389 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 Gene3D WRKY domain 209 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 517 IPR044810 GO:0003700
Pvu8g0406 518 SUPERFAMILY WRKY DNA-binding domain 221 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 MobiDBLite consensus disorder prediction 466 482 - -
Pvu8g0406 518 ProSiteProfiles WRKY domain profile. 218 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 MobiDBLite consensus disorder prediction 289 344 - -
Pvu8g0406 518 MobiDBLite consensus disorder prediction 272 383 - -
Pvu8g0406 518 MobiDBLite consensus disorder prediction 461 500 - -
Pvu8g0406 518 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 MobiDBLite consensus disorder prediction 1 32 - -
Pvu8g0406 518 MobiDBLite consensus disorder prediction 272 288 - -
Pvu8g0406 518 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0406 518 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0406 Pvu-Chr8 3354570 3359078 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu8g0406 WRKY 1e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0406 8 3354570 3359078 Pvu8g0406 8 3354570 3359078 ECH