Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0377 ATGTCGGAGGCAAAAGACCCGACGATCAAGCTCTTCGGGAAGACGATCCCCTTGTCAGAGATTACCACTGGATCCGCCGGAGCTCCGGCTTCTTCTTCCGGTGACGTTGTTGATGAGAGTGTTGAGCAGAGCCATGCTTCTTCCTCCAACTCCTCGAGGGAGTCTCATACGCGAGAGGAAGGTGTTGTTGACAAGGACTCACTGGGAGAAAAAACACCTGATAATAAGAAGGAAGATAGAGCCCCAACCCAATCATTAGAAGAGGTCAACAATCTAGATACCACCTCTGGAACCTGTGAAGAATCCAATGCTCTACCCATTGACAAGGAGACCACTACTTTAAGAACTTCAAAAACTGAAGAAGAACTAAGTGAGACAAGTAAATCACAGGACAAGAACCTCAAAAAACCAGACAAAATACTTCCTTGTCCCCGCTGTAATAGTATGGATACAAAGTTCTGCTACTATAATAACTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCGACTTCTCACTACCGCCAGATAACTGTTCCTGATGCTGCACTCCAGAATCCTCAAATTGACTTGCCAAATGGAGCGTATCATCCTTCCTTGAAATGCAATGGGGCAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCGATGACATCGGTTTTGAACCTTGCTGATAAAACCGTGCACAACTATCCCAGAAATGGATTTCATAAACCTGAAGAACTAAAAATTCCTGTTCCACATGCCAGTGGAGAAAAAAGGGATGATCAATCCAATAAATCTTCAGTTACCTCCACAAAGTCAGCGGAAGGTGCAAGCACCAATGGAGCCCAAGAACAAGCTATGCCGAACTCTCATTCTTTCCCACCACAGGTTCCCTACTTTACTGGTAACTCTTGGCCTATTCCATGGAATCCAGTGCAGTGGAGTTCTCCAGTACCGCCGCCTGCCTTTTGTCACCCCGGATTCACGGTGCCATTCTATCCCGCAGCAGCTTATTGGGGTTGTGCTGTGTCTGGTGCGTGGAACATCCCATGGATAGCACAACCGTCCTCACCCAAGGGTGCAACTTCTAACTCTGGCCCTAACTCACCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTGAAATCAAATGAATCTGGTGGTGGTGAGGATGGACACAACAAAGAAAACAACAAAGAGAAGTGCCTGTGGGTTCCAAAAACTCTAAGGATTGATGACTCGGGAGATGCAGCAAAAAGCACTATATGGACAACACTGGGGATTAGAAATGACAAGGTTGACTCAGTTCCTAGGGAAACACTCTTCAAAGGCTTCCCTTCAAAGCTTGATGAGAAAAACCATTCAATGCAAGCCTCGCCAGTGTTGCAGGCCAATCCGGCTGCATTGTCAAGGTCACTTAACTTTCATGAGACCTCATAG 1512 0.4656 MSEAKDPTIKLFGKTIPLSEITTGSAGAPASSSGDVVDESVEQSHASSSNSSRESHTREEGVVDKDSLGEKTPDNKKEDRAPTQSLEEVNNLDTTSGTCEESNALPIDKETTTLRTSKTEEELSETSKSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSTSHYRQITVPDAALQNPQIDLPNGAYHPSLKCNGAVLTFGSDTPLCESMTSVLNLADKTVHNYPRNGFHKPEELKIPVPHASGEKRDDQSNKSSVTSTKSAEGASTNGAQEQAMPNSHSFPPQVPYFTGNSWPIPWNPVQWSSPVPPPAFCHPGFTVPFYPAAAYWGCAVSGAWNIPWIAQPSSPKGATSNSGPNSPTLGKHSREDNILKSNESGGGEDGHNKENNKEKCLWVPKTLRIDDSGDAAKSTIWTTLGIRNDKVDSVPRETLFKGFPSKLDEKNHSMQASPVLQANPAALSRSLNFHETS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0377 503 MobiDBLite consensus disorder prediction 399 423 - -
Pvu8g0377 503 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Pvu8g0377 503 MobiDBLite consensus disorder prediction 379 398 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 470 489 - -
Pvu8g0377 503 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Pvu8g0377 503 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 502 - -
Pvu8g0377 503 PANTHER CYCLIC DOF FACTOR 2 1 502 IPR045174 GO:0003700|GO:0006355
Pvu8g0377 503 MobiDBLite consensus disorder prediction 85 112 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 379 423 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 52 84 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 18 51 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 260 318 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 113 139 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 1 140 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 260 288 - -
Pvu8g0377 503 MobiDBLite consensus disorder prediction 289 318 - -
Pvu8g0377 503 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0377 Pvu-Chr8 3099220 3102990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0377 6 503 C2C2-Dof Transcription Factor Family AT5G39660 43.130 2.70e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu8g0377 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0377 - - gmx:100788247 822.002