Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0285 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACGTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGAGCTGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGAACTCAAAGAAATCTTCTAGGAGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACGCAGTTCATGCTGGATCAGTTGGCTGACCTTCAAAACAAGGAACAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGACGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATTCTCACTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACTTTGCAGATTGGTCCTGATTACAGGTACAACGTTGTAGCTTCAGATCAGATAACTGCAACAACTCCAGCTCAACAAGTGAGTGGTTTTATTCCAGGGTGGATGCTATGA 747 0.4471 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLDEINSRNHYRQSWEAGDQSMQYGGPQNSHSQGFFQPLECNPTLQIGPDYRYNVVASDQITATTPAQQVSGFIPGWML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0285 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 234 - -
Pvu8g0285 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu8g0285 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu8g0285 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu8g0285 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pvu8g0285 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pvu8g0285 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pvu8g0285 248 PANTHER MADS BOX PROTEIN 1 234 - -
Pvu8g0285 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu8g0285 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu8g0285 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu8g0285 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu8g0285 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu8g0285 248 Coils Coil 124 144 - -
Pvu8g0285 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0285 Pvu-Chr8 2315794 2321854 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu8g0285 K-box 4.9e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0285 8 2315794 2321854 Pvu8g0285 8 2315794 2321854 ECH
Pvu8g0285 8 2315794 2321854 Pvu3g1889 3 39436737 39441349 ECH
Pvu8g0285 8 2315794 2321854 Pvu9g2098 9 30080599 30089684 ECH
Pvu4g0457 4 4755889 4761333 Pvu8g0285 8 2315794 2321854 PCT