Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0284 ATGGGAAGGGGTAGGGTTCAGCTCAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACCTTCTCCAAAAGGAGAACGGGACTTCTCAAGAAAGCTCACGAAATCTCTGTGCTCTGCGATGCTCAAGTCGCTTTGGTTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGATGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTTAATGGGACCAACAATGATTCTGAGGGCAATTGGTCTTTCGAATATATCAAGCTCAACGCTAAAGTTGAAGTCTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGAGCTTGATCCCTTGAATTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCACGGACATTACAAGAGCAAAACAGCAAGCTAACAAAGATGAAGGAGAAAGAGAAGACAATGACTGAACGTCCACAGAGCGTACCAGAAACTCTTGGCCAAAATTCAACCAACCTCAACTTATGTTCTCCACAACTATTACCATCACAAAGACTTTTAACTCTCAGTGGGACATTGCAAGGAAGAACAAGGGTGGAGGAAAGGGGTGAAGCTCAAACAGTGCCAACTGCCAATTCACTCATCCCACCATGGATGCTGCACATCTGA 732 0.4413 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALVMFSTKGKLFEYSSERSMEDVLERYERYTHTALNGTNNDSEGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKMKEKEKTMTERPQSVPETLGQNSTNLNLCSPQLLPSQRLLTLSGTLQGRTRVEERGEAQTVPTANSLIPPWMLHI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0284 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu8g0284 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu8g0284 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu8g0284 243 MobiDBLite consensus disorder prediction 169 188 - -
Pvu8g0284 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 209 - -
Pvu8g0284 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu8g0284 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu8g0284 243 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu8g0284 243 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pvu8g0284 243 PANTHER MADS BOX PROTEIN 1 209 - -
Pvu8g0284 243 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pvu8g0284 243 Coils Coil 123 179 - -
Pvu8g0284 243 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Pvu8g0284 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu8g0284 243 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0284 Pvu-Chr8 2299894 2307811 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu8g0284 K-box 1.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0284 8 2299894 2307811 Pvu8g0284 8 2299894 2307811 ECH
Pvu8g0284 8 2299894 2307811 Pvu3g2891 3 50655820 50658360 ECH
Pvu2g1772 2 32030021 32036233 Pvu8g0284 8 2299894 2307811 ECH
Pvu4g0458 4 4785559 4786254 Pvu8g0284 8 2299894 2307811 PCT
Pvu8g0284 8 2299894 2307811 Pvu4g0459 4 4792367 4799405 PCT