Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1053 ATGGATGCAGGCAGTTCAACGGATGAAACCACCACCACCAGCGACTCTCTTTCCCTTCCTCCCAACCAATCTCCGCCGCCTCTCATCCGCGTCGGAAGTGGCGGCGTCGACCCCGACGCTGTTTCCGGCGAGGCCGAATCCCGCAAACTTCCTTCCTCCAAATACAAAGGCGTGGTACCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGACGCGACGCTGTCACCAACTTCAAGCCTCTTGCCGGAGCCGGCGACGACGCAGAGTCTGAGTTCCTTAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTCCGCAAACACACCTACGACGACGAGCTCCAGCAGAGCACTCGCTGCGGCAGGCGCCGCCGCGCTGCCGAGGCTGCATCGAGCGGCGCGTTTGACCCGCAGGCGCGTGAGCAGCTTTTCGAGAAAACGGTCACGCCCAGCGACGTCGGGAAGCTGAATAGATTGGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCCTTGAGCACTGGATCCGGTAGCGGAGTCTCGCTGTGCACTGCGGCGGCGGCGGCGAAGGGAGTGCTTTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTTCTTACCAAAGGATGGAGCCGGTTCGTGAAGGAGAATAATTTGAGAGCCGGTGACGCGGTTCGGTTTTTCAAGTCAACTGGACCGGACCGGCAGCTTTATATAGACTGCAAGGCCAGGAGCAGTGGCGGTATTTGTGAGCTTAATAACAATAATGCTGGCGGTTTGTTTGTCCCGGTGGGACCAGTTGTTGAGCAGGTTCAGATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGTTCGGATGGTGTCCGGGTTGGTTATGAGGGGAAGCGAAAAGAGATGGAACTGTTTGCATTCGAATGTAGCAAAAAGTTAAAAGTAATCGGAGCTTTGTAA 1086 0.5691 MDAGSSTDETTTTSDSLSLPPNQSPPPLIRVGSGGVDPDAVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELQQSTRCGRRRRAAEAASSGAFDPQAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSTGSGSGVSLCTAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRAGDAVRFFKSTGPDRQLYIDCKARSSGGICELNNNNAGGLFVPVGPVVEQVQMVRLFGVNLLKLPGSDGVRVGYEGKRKEMELFAFECSKKLKVIGAL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1053 361 CDD AP2 53 108 IPR001471 GO:0003700|GO:0006355
Pvu7g1053 361 SUPERFAMILY DNA-binding pseudobarrel domain 172 284 IPR015300 -
Pvu7g1053 361 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 361 IPR044800 GO:0003700
Pvu7g1053 361 ProSiteProfiles B3 DNA-binding domain profile. 174 288 IPR003340 GO:0003677
Pvu7g1053 361 CDD B3_DNA 173 282 IPR003340 GO:0003677
Pvu7g1053 361 SMART B3_2 174 287 IPR003340 GO:0003677
Pvu7g1053 361 MobiDBLite consensus disorder prediction 1 19 - -
Pvu7g1053 361 Pfam AP2 domain 53 101 IPR001471 GO:0003700|GO:0006355
Pvu7g1053 361 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 361 - -
Pvu7g1053 361 MobiDBLite consensus disorder prediction 1 63 - -
Pvu7g1053 361 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Pvu7g1053 361 SMART rav1_2 54 115 IPR001471 GO:0003700|GO:0006355
Pvu7g1053 361 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700|GO:0006355
Pvu7g1053 361 ProSiteProfiles AP2/ERF domain profile. 54 109 IPR001471 GO:0003700|GO:0006355
Pvu7g1053 361 Gene3D - 164 292 IPR015300 -
Pvu7g1053 361 Pfam B3 DNA binding domain 174 271 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1053 Pvu-Chr7 11606561 11608030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1053 5 361 B3 DNA Binding Superfamily AT1G25560 57.552 2.17e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Pvu7g1053 B3 2.6e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1053 7 11606561 11608030 Pvu7g1053 7 11606561 11608030 ECH