Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0338 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCCCCGTTGCTGCCTCTGGTCAAATGCCGTCAAACGGAGGCTACAGTTCGCTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAATTGCAGCAATGGCGGCGGCGTTTCGCTGTATCCTTACTCCGAGTCAACACCTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGCCAGCTCCGCACCGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATTCAGGCTTCGCTGGAGAGTCAGTTCGCCGCCGCCGGCAGTGGCTCCTCCGGCCAGACTCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGGAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTATGAATAATAATAATAATAACAAGGACCTGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATGGAAAATAACGTGGTGGAAGTTGAGAGGTTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGCAACTCGCAATAAAGGCGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTCAGAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTATGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTATGTAACAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1098 0.52 MLNKDACSPSSNGGFGPVAASGQMPSNGGYSSLYSALSNDNLPSLSANCSNGGGVSLYPYSESTPQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRTANKELQKQLHLVIQASLESQFAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNIMNNNNNNKDLQEVSDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNATRNKGATRPRATATPPEAVQKVYVRGGQKEEEPMEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0338 365 SUPERFAMILY CCCH zinc finger 277 312 IPR036855 GO:0046872
Pvu7g0338 365 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Pvu7g0338 365 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Pvu7g0338 365 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Pvu7g0338 365 SUPERFAMILY CCCH zinc finger 314 348 IPR036855 GO:0046872
Pvu7g0338 365 Gene3D - 314 350 - -
Pvu7g0338 365 Gene3D - 275 313 - -
Pvu7g0338 365 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Pvu7g0338 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 51 355 - -
Pvu7g0338 365 Coils Coil 89 116 - -
Pvu7g0338 365 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 355 IPR045877 GO:0003729
Pvu7g0338 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 306 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0338 Pvu-Chr7 2618882 2622003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0338 60 360 C3H Transcription Factor Family AT1G68200 49.515 1.79e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu7g0338 zf-CCCH 3e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0338 7 2618882 2622003 Pvu7g0338 7 2618882 2622003 ECH