Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0328 ATGTCTACAAATGCAACTCACACTACCTTAACCAGCTATACCTGCGTTGAAGAGTTAAAACTATTTCAGTTCCCAATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGATAAACAAGATGACGGCATAATTGATCTGGGTCTCAGTCTCGGAACAGTTCAGCATGAAGCTTACCAATCTTCTAGCAACTTGTATGATGATGACCTTATGGACTGGCCTCAATCTAATTTGAACCTCAAGAACTCAAGCACAATGCATGGTAGACCTGTTCACGAAAATTTTGATGAAGAGATAGAGGGGGTGCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGAGTTACCATTGGTAGGAAAATTTGTGTGCTTGATCACGGTGGATACTCAAGCTTAGCACTTCAATTAGAAGACATGTTTGGAAACCAATCCGTTTCTGGATTACGATTGTTCCAATCCAGATCAGACTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGACCTGTCGGTGATGTCCCTTGGAAGGAATTTATAGAATGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATGCAGCAGGCATTGTTTCTTGA 633 0.406 MSTNATHTTLTSYTCVEELKLFQFPMDSNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYQSSSNLYDDDLMDWPQSNLNLKNSSTMHGRPVHENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGNQSVSGLRLFQSRSDYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNAAGIVS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0328 210 Gene3D - 111 210 - -
Pvu7g0328 210 ProSiteProfiles PB1 domain profile. 117 205 IPR000270 GO:0005515
Pvu7g0328 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 208 IPR003311 GO:0005634|GO:0006355
Pvu7g0328 210 SUPERFAMILY CAD & PB1 domains 117 200 - -
Pvu7g0328 210 Pfam AUX/IAA family 86 206 IPR033389 -
Pvu7g0328 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 26 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0328 Pvu-Chr7 2512708 2514196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0328 107 203 B3 DNA Binding Superfamily AT1G34310 34.021 9.89e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu7g0328 AUX_IAA 1.2e-21 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0328 7 2512708 2514196 Pvu7g0328 7 2512708 2514196 ECH