Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0270 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCGCAAGACACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTGTTCAGGGTGTAGATGTCTATCCTGCTGCACTGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAACGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCCAAGAGTAAGAGCACATCTGCTGACGGATCTACTACTTCTACTGCGCCATCGACCAAGACACCACAGACTAGTGCGCCTCCTACTTCAACAACGCCAGTTTCAACTGCACCTCAAGCTCCTGCTGCAACTGAGGCACTGCCTGCAACTGTTACTGCACCTGAATCTTCACCTTCTCCAGCACCAGCTCCTCCTGCTTCTATTTCTCCAGGAACTCCTGTGGAGGGGTCTGATGTCTATGGGCTAGCGGCATCCAATCTCGTTGCTGGTAGCAACTTGGAGGGAACAATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCACTTCGAGCTGCTTATAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCTGGAATCCCTGAACAAGCTGAAGCTCCAGTTGTAGCCAGAGCACCTGCAGGTGCTCAACCTGCAAATCCTCCTGCTGCTGCGGCTCCACAGACAGAACAACCTGCTCCGGTTACCTCAACTGGACCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGCCTTCCCAACGTGGGTGCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAACAGTCAACAATTTCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAAGGGAACATATTGGGGCAGCTGGCTGGTGGCATGCCACAAGCAGTGACCGTCACTGCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTCTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCGAACTACCTTTTAGATCACATTCACGAGTTTGATGAACAATAG 1203 0.483 MKVFVKTLKGTHFEIEVQPQDTVSEVKKSIETVQGVDVYPAALQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSADGSTTSTAPSTKTPQTSAPPTSTTPVSTAPQAPAATEALPATVTAPESSPSPAPAPPASISPGTPVEGSDVYGLAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPVVARAPAGAQPANPPAAAAPQTEQPAPVTSTGPNANPLDLFPQGLPNVGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTAEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHIHEFDEQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0270 400 TIGRFAM rad23: UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Pvu7g0270 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pvu7g0270 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 399 - -
Pvu7g0270 400 SUPERFAMILY UBA-like 336 398 IPR009060 GO:0005515
Pvu7g0270 400 SUPERFAMILY UBA-like 164 218 IPR009060 GO:0005515
Pvu7g0270 400 SUPERFAMILY XPC-binding domain 271 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pvu7g0270 400 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pvu7g0270 400 MobiDBLite consensus disorder prediction 79 113 - -
Pvu7g0270 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 208 IPR015940 -
Pvu7g0270 400 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Pvu7g0270 400 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Pvu7g0270 400 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Pvu7g0270 400 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Pvu7g0270 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 399 - -
Pvu7g0270 400 MobiDBLite consensus disorder prediction 129 143 - -
Pvu7g0270 400 Gene3D - 160 210 - -
Pvu7g0270 400 MobiDBLite consensus disorder prediction 222 251 - -
Pvu7g0270 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 393 IPR015940 -
Pvu7g0270 400 MobiDBLite consensus disorder prediction 79 146 - -
Pvu7g0270 400 Gene3D - 1 80 - -
Pvu7g0270 400 CDD UBA1_Rad23_plant 161 210 - -
Pvu7g0270 400 Pfam UBA/TS-N domain 170 205 IPR015940 -
Pvu7g0270 400 Pfam UBA/TS-N domain 355 390 IPR015940 -
Pvu7g0270 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pvu7g0270 400 Gene3D - 347 394 - -
Pvu7g0270 400 Gene3D - 265 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pvu7g0270 400 SMART uba_6 167 207 IPR015940 -
Pvu7g0270 400 SMART uba_6 355 392 IPR015940 -
Pvu7g0270 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Pvu7g0270 400 SMART CBM 272 315 IPR006636 -
Pvu7g0270 400 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Pvu7g0270 400 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0270 Pvu-Chr7 1931720 1935524 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0270 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 4.46e-09 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0270 7 1931720 1935524 Pvu7g0270 7 1931720 1935524 ECH