Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2252 ATGGAACTATCAGATTTGCAAAACAACAAGCAGAACACCACCACCAACACCAACAACAGCACCAACACAAAAACAAACACAGTACGAGGTGGTGCTGCTGCTGGTGGTGCTGGTGGTGGTGGTGCCCATCCCAACCATCACCACCAACAATCCTCTTCTTCCCATCTTCAGCTCCCTTTTGATGCCAGGACAAACCCTTCATCCACCTTCCTCTCTTCCTCCACCTCTTCTTCTTCCACCAATTCTTCCTCCTCTTCCTCCTCCGCCTCCGCCTCTTCCCACATCATCGACGCTTCCCTAGCCATCGCCACCATATCTGATGATTCCGCCAACAAGACCCAACAGCTCTCCACCGCCGCCGCCGCCGCCTCCCCCGCCGCCAACCCTCCCAAGCGATCTACCAAGGACAGGCATACCAAAGTCGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCCGCCAGGGTTTTCCAATTGACCAGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGCACCATCCCCGCTAATTTCTCCACGCTCAACGTCTCGTTCCGCAGCAGCGGCTCCACGCTGTCGGCGCCGCCGTCGAAGTCCGCCCCGCACACCTTCCACGGCGCGCTCGCACTCGCTCACCACCCTTACGAGGAGGCCTTTCAACACACCGCTTTGCTTGGCTTCCACGCTCACGCTCACCAGCAGCACCAGCAGCACCAGCTTCTTTCCGCAGATCAAATCGCGGAAGCGCTTCCCAGCGGTGGCGGCGACTCCGGCGACGGCTATCTCAGGAAACGCTACCGCGAAGATCTGTTCAAAGACGATAACATTAACACGCAATCACAGAACGAGAGCGGCGACGGTTCTTCGCCGAAAACTCCGAACCTACAGCTACCGAAGCAGCAGGCTCAGCAGCAAACCGAAGCTGGTCCTGGGCTTCTCAGGCCCACGAATTTGCTACCCGCGACAGCGATGTGGGCCGTGGCACCCGCTCCCGCAAGCGGGCCTCCCGGCAGCACAATTTGGATGCTTCCGGTAACCGCGGCTTCTTCTGCTTCTGCAGCAGCTGTAGCTGCCGCTTCAGCTTCTGCTTCTTCTGGTGGTGGTGGATCCACTGCGAGTTCGGAGACTCCGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCCCTTGAATTCCAAGGCGCACGTGGGGGTTCTCTGCAACTGGGGTCAATGTTAATGCCGCAGCAACCTTCTCAACATCTGGGTCTCGCCATGTCCGATTCCAACTTCGGCATGTTGGCTGCGCTCAATGCTTACACCAGACCTGGTTTCAATATTAATTCTGACAATCATCATCACCATCATCACCATCATCATCCCTTGGACCATCAAAATCAACATCAACATCAACATCAACCTCAACCTAGTGAGAGTGGAGAAGATGATCCTAATAGCTCCCAGTGA 1524 0.5715 MELSDLQNNKQNTTTNTNNSTNTKTNTVRGGAAAGGAGGGGAHPNHHHQQSSSSHLQLPFDARTNPSSTFLSSSTSSSSTNSSSSSSSASASSHIIDASLAIATISDDSANKTQQLSTAAAAASPAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQHTALLGFHAHAHQQHQQHQLLSADQIAEALPSGGGDSGDGYLRKRYREDLFKDDNINTQSQNESGDGSSPKTPNLQLPKQQAQQQTEAGPGLLRPTNLLPATAMWAVAPAPASGPPGSTIWMLPVTAASSASAAAVAAASASASSGGGGSTASSETPMWPFPQSGFMPRFNLPSALEFQGARGGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAYTRPGFNINSDNHHHHHHHHHPLDHQNQHQHQHQPQPSESGEDDPNSSQ* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2252 507 Pfam TCP family transcription factor 133 256 IPR017887 -
Pvu6g2252 507 PANTHER TRANSCRIPTION FACTOR TCP8 42 507 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 470 484 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 295 331 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 131 145 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 45 90 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 464 507 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 487 507 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 114 145 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 1 90 - -
Pvu6g2252 507 MobiDBLite consensus disorder prediction 292 335 - -
Pvu6g2252 507 ProSiteProfiles TCP domain profile. 134 188 IPR017887 -
Pvu6g2252 507 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 507 IPR005333 GO:0003700
Pvu6g2252 507 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2252 Pvu-Chr6 31721162 31724447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2252 131 449 TCP Transcription Factor Family AT1G35560 46.440 2.46e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu6g2252 TCP 6.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2252 - - vra:106776202 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2252 6 31721162 31724447 Pvu6g2252 6 31721162 31724447 ECH