Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1953 ATGGGCTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGAATTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAACAGCAGCAACAAACTCAGCCATCAGAGCCTTTGAATTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGTGGTGGTAGAAAGAATAAGCGAGTCAAGAAATCAACCTCAGCTACAACCACCACCTCAAATGGCAGCAACATGGATGGTGAGTTGACAACCCACCTCACAATTCCTCCTCTTGCAGTGGATGATCACAAAACCACACCTTCCCCTCTCTACCGATCCTTGTGCTTGCCACAACAGAATCTGACGAGTACCAAAGTTTCAGAAGGCAGAGACTTTGCTATTGGCAATGGAATCTTTCTGAGTTCAACTCTGCCTTTACCTCAAAACCAAAACCTTCTCTTCCCTTTCACAACCTCAAACTCTTTTGACACAAACACATGTGCAGTATCCAACTCTTTGCAATCTTCCAGTGTGTATAACTACGGTGAAGAGTTTAAAATACTGGAGGAGCCAACCGTCAACAGTACAATTCCCAGCAGTGGTGGTGGCAACAGGACACAGCCATGGGAGATAGCAGCAACAAGTTCTGGTTTGGAAATGTCCAACTATTGGAGTTGGGAGGACATTGATTCGTTGGTCTCAACTGATCCAAATAATCCTTGGGATGATTCTGACATCAAACCCTGA 843 0.4531 MGLSSKQVSNRGLDWDQNLLQAQNLELPKPTPMRKQQQQQTQPSEPLNCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTSATTTTSNGSNMDGELTTHLTIPPLAVDDHKTTPSPLYRSLCLPQQNLTSTKVSEGRDFAIGNGIFLSSTLPLPQNQNLLFPFTTSNSFDTNTCAVSNSLQSSSVYNYGEEFKILEEPTVNSTIPSSGGGNRTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1953 280 MobiDBLite consensus disorder prediction 91 121 - -
Pvu6g1953 280 MobiDBLite consensus disorder prediction 104 121 - -
Pvu6g1953 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 196 IPR045174 GO:0003700|GO:0006355
Pvu6g1953 280 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Pvu6g1953 280 Pfam Dof domain, zinc finger 46 99 IPR003851 GO:0003677|GO:0006355
Pvu6g1953 280 MobiDBLite consensus disorder prediction 27 48 - -
Pvu6g1953 280 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Pvu6g1953 280 PANTHER OS06G0284500 PROTEIN 34 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1953 Pvu-Chr6 29645412 29647711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1953 30 135 C2C2-Dof Transcription Factor Family AT5G60200 47.863 7.54e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu6g1953 zf-Dof 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1953 - - vra:106774613 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2330 2 39099335 39101145 Pvu6g1953 6 29645412 29647711 PCT