Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1910 ATGGAGCAAGGAGGTGGAGAAGGAGGTGACATGAAGAAACTGCCTCAGGATTCAAGAATGAAGGAGATGCAGCAAGGGGAAGCACAGGCTCAGGTTCAGGCCCCTCAACAACCCCAAAAGTGTCCTCGATGCGACTCTCTTAACACCAAATTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTCCCCGTCGGTGGCGGTTGCCGCAAGGGGAAGCGCGCCAAGAATTCCAATCCATCATCATCGGATAATTCCTCTTCTCGCTCGCTTCCGCAACAACAACAACAATCACAAGACGTGGTGGTTCAAACCCAACCACCACCTTTAACAACGGCGATGAGGGCTAAAGACCCTTCTTCAGTTTTGGCTTCACCTTTCTACCAAAGTGGTGGCTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAATCCATCATCACACCCTTTTGATCAGTCTCTGAATACTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGGCCCACTGGGTCAATTGGGACAATTCGTCCGCCGCAATTGTATCAAAGGGAGATGGTGTCTCTATATGATCAATCCACCATGGCTAATACCAATAGCAATAGCAGTGGTGTTTCTCACCATGATTGGCCTCATAGCTTCATCAATAATAATACTAATGCCAGCAATAGAGCCTCTGATGCCTCTTTGTGGAGCACCATCAGTACCACTATTGGTGGTAACTCCGAGAGGACTAGTGCTGCTGCTGCTACTGTTTCTGGGTCCTCTTTGGTGCAAAATCAATGGCCTGATATTCCAGGGTATGGCCCTCCACCGTGA 894 0.4843 MEQGGGEGGDMKKLPQDSRMKEMQQGEAQAQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKNSNPSSSDNSSSRSLPQQQQQSQDVVVQTQPPPLTTAMRAKDPSSVLASPFYQSGGYLSSLAAMHSLNPSSHPFDQSLNTDALRSSNLGLLSGFNVQRPTGSIGTIRPPQLYQREMVSLYDQSTMANTNSNSSGVSHHDWPHSFINNNTNASNRASDASLWSTISTTIGGNSERTSAAAATVSGSSLVQNQWPDIPGYGPPP* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1910 297 MobiDBLite consensus disorder prediction 1 40 - -
Pvu6g1910 297 MobiDBLite consensus disorder prediction 275 297 - -
Pvu6g1910 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 296 IPR045174 GO:0003700|GO:0006355
Pvu6g1910 297 MobiDBLite consensus disorder prediction 83 122 - -
Pvu6g1910 297 MobiDBLite consensus disorder prediction 94 122 - -
Pvu6g1910 297 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pvu6g1910 297 MobiDBLite consensus disorder prediction 22 40 - -
Pvu6g1910 297 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pvu6g1910 297 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 3 296 - -
Pvu6g1910 297 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1910 Pvu-Chr6 29322500 29324409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1910 15 97 C2C2-Dof Transcription Factor Family AT5G60200 65.060 4.59e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu6g1910 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1910 - - gmx:100817065 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1910 6 29322500 29324409 Pvu6g1910 6 29322500 29324409 ECH
Pvu2g2371 2 39579558 39580512 Pvu6g1910 6 29322500 29324409 PCT