Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1909 ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATGAGAAGGTGTTGATGGGTTCGTTCAGTGGAAGTAAGAATAGTAAGGTAATGGAAAAAGCAGATCAAGAGGTTTTGCAGCAGCAGCTGCAACAACAAAGCCTCAAGTGCCCGCGTTGTGACTCATCAAACACTAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCTCGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGGGGGTGCAGAAAAAACAAGCGTCTCAAGCGTCCAATAACAATCTCTTCTTCTGCTGCCATTGAAACTGCTTCTTCTTCTAATTCTTCTGCTCTCACTGCTGCTTCGCAACCCCAGATCGACACTGCTTCAACCTCTTTGTTTTATGGGTTACCGAGTAGCTCCACCGATGTGAATCTTCCACTCGTCCCTAGGTTTGGTTCCAGAATCTCCACTTCCAGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCAATGAAGCTAGTGAGAATAACAGTTTTAGAAACGGGTTTGGTTCAAATAACGCGCTTCTTTCAAGTTATAATTCCATCTTTGGTTCCTCTTCAAGTTCTACATCCACTACTCCAGCTATGTCTTCCCTGTTGAGCTCTACTTTTCTTCAACACAAGTTCATCGGTTGTGGATTGAAAGATGGTGTTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGTTGCAAATGTCTAGTGATAACAGTGAGGCAGGGATGGTAGCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAACAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCTTCGCTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAGCGATCAAGCTGCTAATATCGGTTCTTCAGTCACTTCTCTGATCTAG 1038 0.447 MSGNCEKMVVIPPTTNQWPQVDDEKVLMGSFSGSKNSKVMEKADQEVLQQQLQQQSLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPITISSSAAIETASSSNSSALTAASQPQIDTASTSLFYGLPSSSTDVNLPLVPRFGSRISTSRFDLQLNNALGLGFSSNEASENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTTPAMSSLLSSTFLQHKFIGCGLKDGVDSNTFQHGLGLTPLEQLQMSSDNSEAGMVALKDVKVELGQNNRLEWNGACQNQIQHVGMYDPSLYWNNSATALGVWSDQAANIGSSVTSLI* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1909 345 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Pvu6g1909 345 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Pvu6g1909 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 3 329 - -
Pvu6g1909 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 329 IPR045174 GO:0003700|GO:0006355
Pvu6g1909 345 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1909 Pvu-Chr6 29308624 29310821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1909 1 345 C2C2-Dof Transcription Factor Family AT1G28310 38.378 5.76e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu6g1909 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1909 - - gmx:778098 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1909 6 29308624 29310821 Pvu6g1909 6 29308624 29310821 ECH
Pvu2g2372 2 39587482 39589579 Pvu6g1909 6 29308624 29310821 PCT