Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1829 ATGGCTGAGGAATCTCAAGGGATTAAGCTGTTTGGTGCAATGATTAGACTGAACAGTGAGGAAGTAAAGAAAGGAGAAAAAGGAAGGGAATACAAGAGGGAGGAGAAGAGAACAGAGAAGATAATACCGTGCCCCAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTACTGGACTGCCGGTGGGGCCCTCCGAAACGTCGCCATCGGAGCCGGCCGTCGGAAGGGCAAGCCGTCGTGTCATGGTGGCGGTGAGTTCCCCGATGGCTCTGTCTATGAAAGTTCGGAAGATGAGAACAAGTTTGAGATGGATCATAGGTTGGTTTCGGAAGAGGGTCACACAGAATTCCGGCAAATTTTCCCGGCGACCAAGCGGCGGAGGGCTCCATCAGGTGGGTGGTTATCCGTCTCATGCTCGTCTTATCTTATCTTATTTGTATTTTTTTGCGGCGGCAAGCGGCGGAAGATTCTTAATATGGTTTCATATCCATGA 546 0.4853 MAEESQGIKLFGAMIRLNSEEVKKGEKGREYKREEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAIGAGRRKGKPSCHGGGEFPDGSVYESSEDENKFEMDHRLVSEEGHTEFRQIFPATKRRRAPSGGWLSVSCSSYLILFVFFCGGKRRKILNMVSYP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1829 181 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Pvu6g1829 181 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Pvu6g1829 181 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Pvu6g1829 181 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 4 145 - -
Pvu6g1829 181 PANTHER CYCLIC DOF FACTOR 2 4 145 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1829 Pvu-Chr6 28683988 28685016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1829 3 144 C2C2-Dof Transcription Factor Family AT1G29160 50.000 1.09e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu6g1829 zf-Dof 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1829 - - gmx:100820604 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1829 6 28683988 28685016 Pvu6g1829 6 28683988 28685016 ECH