Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1204 ATGGAAGAAATAGGTCCCAATTCATGCGCACAGGCATCGTTAGAGAAGAAAGCAAGACCACAAGAGCAGTTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAATTACAGCCTCACACAACCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGTTCTCTCAGAAACGTTCCCGTTGGAGGTGGCTCCAGGAAGAACAAGAAGGCCACCTCATCAAAGGTTCCTGACTTGAATCCACCAAGCCTCTCATCAGTCTCGGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATTTGGCTTTTCCTGCAGCTATGGACAAGTATCATGGCATGTCTCCATATGGTGAGATGCCAAAACTTGAAATTGGTGGTGAGAATAATACTGGTCACCACCATAGCCCTTCTTCTCTTTCACCACCTTATGGCATGGTGTCCAGGGGTTTGAATCCTTATGCTCCTAATCCCTTCATGACAAGCTCAGATTCACTTTACACACCCAACTATCCCATGCAAGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGGGTTTGGAAATAGATCACATGGGGTTCAAGAGAACGGTGGTGGCGGGAGGCTTTTGTTCCCTTTCGGAGACATCAAGCACCTTTCTGCAGGTGTTGAAGTGGAACACAATAAAGAACAAGGAAATAATCCAACTGGATACTGGACTGGAATCATCGGTGAAGGGTCATCATGGTAA 765 0.4458 MEEIGPNSCAQASLEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKATSSKVPDLNPPSLSSVSAISSQNPKMQGVHDLNLAFPAAMDKYHGMSPYGEMPKLEIGGENNTGHHHSPSSLSPPYGMVSRGLNPYAPNPFMTSSDSLYTPNYPMQEIKPNLSFSVDGFGNRSHGVQENGGGGRLLFPFGDIKHLSAGVEVEHNKEQGNNPTGYWTGIIGEGSSW* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1204 254 MobiDBLite consensus disorder prediction 75 98 - -
Pvu6g1204 254 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Pvu6g1204 254 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 248 IPR045174 GO:0003700|GO:0006355
Pvu6g1204 254 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 10 248 - -
Pvu6g1204 254 MobiDBLite consensus disorder prediction 65 98 - -
Pvu6g1204 254 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Pvu6g1204 254 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1204 Pvu-Chr6 23050676 23052519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1204 12 254 C2C2-Dof Transcription Factor Family AT3G61850 47.857 6.27e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu6g1204 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1204 - - pvu:PHAVU_006G114900g 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1204 6 23050676 23052519 Pvu10g1205 10 38220876 38223161 PCT