Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1478 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAGGCAAATGGCAGCAACACTCCTCAGCAGCTGCTTCATCCGATGCCTCAACAGCCGCAGGACCCTCACGCGGGAGTGCATGAAGCTGCAGGCCCAATCCAGCCCGGTTTGATGGCGGATCGGTCTAAGATTCCGGCCCAGGAAGGAGCTCTGAAGTGTCCTCGCTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGCCACTTTTGCAAGACTTGTAGGCGCTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGCAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCCCCGGTTTCTACTGAGAAATCATCACTTCCCAATTCCACAAGTGCGATGCCTGAGCTTATTGGTCGTTTCCCAACCCCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGAACGCAGGTGTTAACTTGCGTGAGATGCAAGCACAGAACGGTTCTCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGCTTCAACTGTTACTACTACTGCTGGAGGAGGAGTGGAACAGTGGCGGTTTCAGCAATTTCCTTTCTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAACTGTTGAAGCTTTGGTTGGAGATATTGCCGCAACTTCTAGGGTTACTCAGCTACCTCCACGGGTTAAATTGGAATACAACGGTGGCTTTAATTTGTCAAGATCTCCTTTGAGTGTCTCAGAAAATAGTAACCATTACTACTCATGGACGGATTTATCTGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 918 0.4804 MVFSSIPVYLDPPNWQQQQNQHQANGSNTPQQLLHPMPQQPQDPHAGVHEAAGPIQPGLMADRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSTEKSSLPNSTSAMPELIGRFPTPFMASLQSMNRYGVGNAGVNLREMQAQNGSHMGFQIGGQGHASTVTTTAGGGVEQWRFQQFPFLNGFDSASAVSSYPFQTETVEALVGDIAATSRVTQLPPRVKLEYNGGFNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1478 305 MobiDBLite consensus disorder prediction 114 152 - -
Pvu5g1478 305 MobiDBLite consensus disorder prediction 12 38 - -
Pvu5g1478 305 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Pvu5g1478 305 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Pvu5g1478 305 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 301 - -
Pvu5g1478 305 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Pvu5g1478 305 MobiDBLite consensus disorder prediction 12 53 - -
Pvu5g1478 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 301 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1478 Pvu-Chr5 37185922 37187662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1478 8 224 C2C2-Dof Transcription Factor Family AT3G55370 41.463 5.66e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu5g1478 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1478 - - gmx:100775899 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1478 5 37185922 37187662 Pvu11g0665 11 5628982 5631847 PCT