Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1422 ATGGATCCTTCTAGTGGACAACCCCAGGAAATATCTAGCCAGTCAGGGGAGAAGAAACCAAGGCCTAATCCAGAACAAGCTCTGAAATGCCCAAGATGCGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGTAAGTCTTGTAGGAGATATTGGACCAAAGGAGGAACACTCAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGAGATCACCATCATCATCATTAAAGAGGGATCATGATCAGACCTTCACACCCAATCTTAATCCACTCACTACATTTCCTCAGTTGTCTTATGGCTCCAATGACTTTGCTCTGGCATTAGCTAGGCTTCAAAAACAATCAAGTGGGCAATTGGGTTACAATGACCATGAAATTTCTGCTTTGAGGAACCCCACAGGCTCCTTTTGTGACATTCTTAGCAATTCAGGCATGAATCCCTCCTCAGCAAATCCTTCATTTTTGGATGCAATTCGAACTGGGTTCCTTGAAACACAAAATCATCTTCAGAATTTGTATTACATGTATGGAAATGGGGACATGGGGGAGGTGGATAATGGCAATTCTGGTGGAGTTGGGGTCAGTGGAGAGATGATGCTCCCTTATAATCAAGTGATGAGCAATGCAGCCACTCAATCAATGAGTGAGTTGATGAGGCAAGAACAGTGTGGTGGCAGTGAACAAAGTGAAAGGAAGTTCTTGGGGGGTTCGCCATGGCAGCTTAATGCAGACTCAACAAACATTGGTGAAATTGATTCAGGAAGAGCAATTGCAAGTTGGAACAGTTTCACATCTTCTTGGCATGGACTTCTCCATAGCCCCCTAATGTAG 864 0.4387 MDPSSGQPQEISSQSGEKKPRPNPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSPSSSLKRDHDQTFTPNLNPLTTFPQLSYGSNDFALALARLQKQSSGQLGYNDHEISALRNPTGSFCDILSNSGMNPSSANPSFLDAIRTGFLETQNHLQNLYYMYGNGDMGEVDNGNSGGVGVSGEMMLPYNQVMSNAATQSMSELMRQEQCGGSEQSERKFLGGSPWQLNADSTNIGEIDSGRAIASWNSFTSSWHGLLHSPLM* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1422 287 MobiDBLite consensus disorder prediction 1 30 - -
Pvu5g1422 287 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Pvu5g1422 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 286 IPR045174 GO:0003700|GO:0006355
Pvu5g1422 287 MobiDBLite consensus disorder prediction 1 20 - -
Pvu5g1422 287 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Pvu5g1422 287 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Pvu5g1422 287 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 14 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1422 Pvu-Chr5 36604141 36605891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1422 26 287 C2C2-Dof Transcription Factor Family AT2G28510 40.511 3.90e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu5g1422 zf-Dof 7.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1422 - - gmx:778104 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1422 5 36604141 36605891 Pvu5g1422 5 36604141 36605891 ECH
Pvu5g1422 5 36604141 36605891 Pvu11g0738 11 6441508 6443452 PCT