Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1006 ATGGGAATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAGGGTCCTCGTGATCGCAGAGTTAGGCTCTCAGCGCACACAGCAATTCAGTTCTACGATGTTCAGGACCGTCTAGGGTATGACAGACCGAGCAAGGCCGTTGACTGGCTAATCAAGAAGGCCAAGAATGCCATTGACAAGCTCGCTGAGCTTCCTCCATGGCACCCTACTGCCAACGCTGCAGATGCAGAGAACAACCATAACCATGCAGGGTCTGGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTTTTTCCCACAACCACTGCCCCCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACACATCCACTGAGGATCTTGGCCTTTCTCTTCACTCCTTCCAAGACCCGGGCCTGATTCATGGCCAGTCCCAAGCAGGTGCAAACCAAACACAAACACCTTCCAATCACCAAACCCTCTTTTCTGGCTCAACTCAAATGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAATGATGCAGGCACCGATATGAACAGAACCGGGTTCATGGTCAACTCACCAGCTCTTCTAGGCCAAGGTGGTTCTGCTGCATATTCCCAGAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCTTCCGCAGAACATCACAAGACACAACCAATTCAACAGGCTTCCATCTTTGGCAGCAGGTTTCTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATTCAAGGCCAGGACGGGAGTCATGGTTTATGGTAA 993 0.4945 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPTANAADAENNHNHAGSGDMAIAEQSESSGYNFQLQRQLGEDHDNHHSAFIPSPIDTDAIAFFPTTTAPSSINFQTYPPDIISRTNTSTEDLGLSLHSFQDPGLIHGQSQAGANQTQTPSNHQTLFSGSTQMGFEANYPRIVTWNNDAGTDMNRTGFMVNSPALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSAEHHKTQPIQQASIFGSRFLSDALPGFCIPARIQGQDGSHGLW* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1006 330 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 324 IPR005333 GO:0003700
Pvu5g1006 330 Pfam TCP family transcription factor 23 116 IPR017887 -
Pvu5g1006 330 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Pvu5g1006 330 PANTHER TRANSCRIPTION FACTOR TCP4 2 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1006 Pvu-Chr5 28857024 28860010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1006 8 324 TCP Transcription Factor Family AT3G15030 44.386 6.31e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu5g1006 TCP 4.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1006 5 28857024 28860010 Pvu5g1006 5 28857024 28860010 ECH
Pvu11g1627 11 41334865 41337658 Pvu5g1006 5 28857024 28860010 PCT