Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0748 ATGGATCCTGACGTCATCGAGATTTCTGCCCCAATTCTTCACCCTTCAAATTTCTATCACCACAACAAGGTCATTTTGCATGATGTGATTGACATTGACAATGATGATGATTCTGAGGATGTAGTGATAATTGGTGAAAATGTTAATAATAGTAACAAAGGGAAGACAATTGATGCTGTTCATGATGCTCTCCAAGTTGTGAATATGTCTGGTTATCCTTTCTCGGTGCCTGATGCAGAAAATTTTGGATCTGTTAGCGGGATTGCATCTTCTAGCAATCTCCCTTCAGTGTCAAATAATATAATCAATGTTGATGGTCATGGTTCTGATCTATCATATGATGACGATGACTGCTTTGATATTTTGTCGGAAGACTATATGGATGTAGACGAGTATGCATTATTACAGAAACATTTTGATAATGTGGCTATACCACCTGGAATTGAAGCACCATTTAATTGGTTGCCACCAGGATATGATGTAGGTTTTAAGAAGACTGGAAATAGTATGTTTTATCCTTGGCATCATATGCAATCGAATGCTGGATTAAGTCCCATGACACCCTCTTCCCAGCCTTCTGTGTCATTAGATCCAACTAACTCTAAAGTTCAAGCATCTTCTATGGGTGATGTTGATTACCCCTCTGGAATAGAGTTGTCTTCTCGTCAATCATTTTCTCAATCTGCCCCTTCTAAGAAGAAATCAGCTACTTCAAAACTCAGAGGACGTACTTCAAATGCTTCAGTAGGAGTAGAATCATCTAAGTCTCACTGGTTTTCAGGGACTTTCCATAGCAAAAAGAAGCCTTCTTCAACATACCTTAGTTTATTTGACCCTTTGGAGTCTGTGAAGCTACCACATGCAGGTCAGCCACCATATGGGGGGCAATTTAAAACTGCTATGATGGCAGATGGTAGTAGTGTTTCCTCCCATTCAAATTTCATTGGACACAATGGATCATTGAATACTTGGGGAACAGATCCAGTAAAATCTTGGTGGAAGATTCCTCAAAATGCTAAACCATTTGCTACTCATAATAAATTTTCTAATAATATTTATTATCCATTTGATCCTGTTGTTGCCCAAACTGAGCATGGATTTGATAACTGGGTTCACGAATCTGCTGGAGATGGATTTAATGGAAAGGCAGTGGATGGGCCTATTGTTACAATCTCGGATGAAGCCAGAGATGAAATCATGAACAAATTTCAAAGTTTTAAACAATTTGACACTGTTGAGGACACTTCAGATCATTACTTTGTGCGCAACAGTTCTTCAATGAAGCAGCCTCCGAAGGATTGGGCTAAAAAAATCCAGGAAGAGTGGAAGATTTTGCAGAAGGATTTGCCAGATTCAATATTTGTCAGAGTTTATGAGTCAAACATGGATCTTCTGAGGGCTGTGATTATTGGAGCTGAAGGGACTCCATATCATGATGGCCTATTCTTTTTTGATGTTTTATTTCCCTGTGGCTATCCCAGTGTACCGCCGCAAGTGCATTACCACTCTGGAGGTCTGCGGCTCAACCCAAATTTGTATAACTGTGGCAAGGTATGCCTTAGTCTGCTGAACACCTGGAATGGCAACAAAAATGAGAAGTGGCTTCCAGGCGTTTCAACGATTCTACAGGTTCTGGTCTCCATACAGGGTCTAATTCTGAATACAAAGCCTTACTTTAATGAACCTGGATATGCACACATGAGTGGTTCAGCAAGAGGTGAAAAGCTTTCCTTTAAGTATAACGAGGACACATTCATTCTATCATTGAGGACAATGATGTATATGATACGAAGGCCTCCAAAGAATTTTGAGGATTTTGTTAAGGGGCACTTCTGCAGCAGAGCTAGTGATATTCTGGTGGCATGTAAGGCATACATGGAAGGTGCTCAAGTTGGGTGTTTGGCCAAAGGAGGGGTCCAGGATGTTGATGAGGGAGACAGAAGCTGCTCACAGGAATTCAAGCTTTCTTTAGCTGGATATATGAACCATCTTGTCAAAGAGTTTGCTCAAACTGGAGCAAAGGACATTGAGAAATTCCTTCCTCCAGCAGCAACCACAGTAGCAGTGAACAAGCCATCAGGGGTGGTGTTGCTTGAGGCTGCAACCTGA 2109 0.4092 MDPDVIEISAPILHPSNFYHHNKVILHDVIDIDNDDDSEDVVIIGENVNNSNKGKTIDAVHDALQVVNMSGYPFSVPDAENFGSVSGIASSSNLPSVSNNIINVDGHGSDLSYDDDDCFDILSEDYMDVDEYALLQKHFDNVAIPPGIEAPFNWLPPGYDVGFKKTGNSMFYPWHHMQSNAGLSPMTPSSQPSVSLDPTNSKVQASSMGDVDYPSGIELSSRQSFSQSAPSKKKSATSKLRGRTSNASVGVESSKSHWFSGTFHSKKKPSSTYLSLFDPLESVKLPHAGQPPYGGQFKTAMMADGSSVSSHSNFIGHNGSLNTWGTDPVKSWWKIPQNAKPFATHNKFSNNIYYPFDPVVAQTEHGFDNWVHESAGDGFNGKAVDGPIVTISDEARDEIMNKFQSFKQFDTVEDTSDHYFVRNSSSMKQPPKDWAKKIQEEWKILQKDLPDSIFVRVYESNMDLLRAVIIGAEGTPYHDGLFFFDVLFPCGYPSVPPQVHYHSGGLRLNPNLYNCGKVCLSLLNTWNGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSARGEKLSFKYNEDTFILSLRTMMYMIRRPPKNFEDFVKGHFCSRASDILVACKAYMEGAQVGCLAKGGVQDVDEGDRSCSQEFKLSLAGYMNHLVKEFAQTGAKDIEKFLPPAATTVAVNKPSGVVLLEAAT* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0748 702 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 433 593 IPR000608 -
Pvu5g0748 702 MobiDBLite consensus disorder prediction 217 248 - -
Pvu5g0748 702 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 19 683 - -
Pvu5g0748 702 CDD UBCc 436 562 IPR000608 -
Pvu5g0748 702 MobiDBLite consensus disorder prediction 183 248 - -
Pvu5g0748 702 SMART ubc_7 436 593 - -
Pvu5g0748 702 Pfam Ubiquitin-conjugating enzyme 438 567 IPR000608 -
Pvu5g0748 702 Gene3D Ubiquitin Conjugating Enzyme 392 675 IPR016135 -
Pvu5g0748 702 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 19 683 - -
Pvu5g0748 702 MobiDBLite consensus disorder prediction 183 208 - -
Pvu5g0748 702 SUPERFAMILY UBC-like 422 600 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0748 Pvu-Chr5 12278834 12284796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0748 376 683 Miscellaneous Gene Families AT2G33770 47.742 1.09e-86 290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0748 5 12278834 12284796 Pvu11g1635 11 41542019 41546164 PCT