Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0743 ATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAATAGTTCTGGAGTTTCGGATAGGAACCAAAGGGTTCACTATCCTGAAAGGAACCCATTCTCGGGTGAGGGATCGCAGGATTCGGGGTTTAAAAGGGAAAGAGAAAGGGTTCTGTTGGCTCAAGGTGATCATGCTAAAACTTTGGGTGGTGGGTTTTCTGGGTTATGTGAAGATGAAGTGGAGGTTGACCCCTTTTATGGTGCTGTGGAATGGGGTGATGTTAGCTTGAGGCAGTGGTTGGATAAACCCCAACGATCTGTGGATGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCGTCTTTCAATCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCGGATTCTCTAGGAGAAGGATTAAACAACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCATCAGAGCTTGGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCTACAACTACTGCTCGGTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAGCAGATATTGCTAATGGAGATGAATTGGTACACTAGTCCTGAAGAGGTTGCTGATGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTGGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAACTCAAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTTAAGTGGCCCAAAGAAGCTTCCTTTTGCTTATGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAAAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTGAGGCAAAGGATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTATTACTTGAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCGGATATTGAAGAAGTGACTAAGCAGCAAATTAGATTTAAGCAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCAATGACAATTGTTGACAGTGAGGATTCTGAATATCTAGGGGCTAGAAAACGAGTGAGACTAGGGACACATGTTAAAAACATTGAGGAATGTGATGATTATGATGATGATGATGGAGGAGATGATCAGAAAAGTAACGGAGGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTTAAGAAACTTGAGTCAGCATACTTTTTGACACGATGTAGACCGGCCTATACCTCTGGGAAACTGGTGAGTACGCATCCTCCTGTAACAAGTGATGGTAGAGGGTCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACAAGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTCTTGAAGGTTTGTGCAAGTATTTATCATTCAGTAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTGGTATGTTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAAATTAAAGTGTTTGAATGTGATTCAATCATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTATGGGATGTGACAAGAAGTCAAGTAGTCTCTGACATGAGGGAGCATGAGCGGCGAGTGTGGTCCATTGATTTCTCGTCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGCACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCGCTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGAATATATTACTATGATCTTCGCAACCTTAAAATGCCGCTGTGTACTTTGGTTGGACACAACAAGACTGTCAGCTACATCAAGTTTGTAGACACTGTCAACCTTGTCTCATCTTCCACAGATAACACTTTAAAGCTTTGGGATTTGTCTACGTGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACAGGTCACGTGAATGTCAAGAACTTTGTGGGATTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAAGCCTTCCCCATGCCTGCTCTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTCACGAAGTGGATGACGCAGCGCAATTCGTTTCGTCAGTTTGTTGGCGGGGTCAGTCATCCACCTTGCTAGCCGCAAATTCCACAGGGAATGTCAAAATTCTGGAGATGGTTTAG 2688 0.4249 MEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNPFSGEGSQDSGFKRERERVLLAQGDHAKTLGGGFSGLCEDEVEVDPFYGAVEWGDVSLRQWLDKPQRSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNNQGGEIKTPTSLCPHDMHHQSLGSEDFVPVKTSTTTARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMNWYTSPEEVADDSSSCASDVYRLGVLLFELFCPLNSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLEQRKQEVAEKLQHTISFLCSDIEEVTKQQIRFKQITGTELGSDDRSASSFPSMTIVDSEDSEYLGARKRVRLGTHVKNIEECDDYDDDDGGDDQKSNGGFLSKSSRLMKNFKKLESAYFLTRCRPAYTSGKLVSTHPPVTSDGRGSVVLTERSCINDKKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVVSDMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSSSTDNTLKLWDLSTCASRVIDSPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0743 895 PANTHER PROTEIN SPA1-RELATED 2 1 895 IPR044630 GO:0009640
Pvu5g0743 895 Pfam WD domain, G-beta repeat 755 790 IPR001680 GO:0005515
Pvu5g0743 895 Pfam WD domain, G-beta repeat 583 612 IPR001680 GO:0005515
Pvu5g0743 895 Pfam WD domain, G-beta repeat 673 706 IPR001680 GO:0005515
Pvu5g0743 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 759 793 - -
Pvu5g0743 895 Gene3D - 559 895 IPR015943 GO:0005515
Pvu5g0743 895 Coils Coil 346 366 - -
Pvu5g0743 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 710 - -
Pvu5g0743 895 PANTHER PROTEIN SPA1-RELATED 3 1 895 - -
Pvu5g0743 895 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0743 895 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Pvu5g0743 895 PRINTS G protein beta WD-40 repeat signature 693 707 IPR020472 -
Pvu5g0743 895 PRINTS G protein beta WD-40 repeat signature 777 791 IPR020472 -
Pvu5g0743 895 Gene3D Transferase(Phosphotransferase) domain 1 91 361 - -
Pvu5g0743 895 SUPERFAMILY Protein kinase-like (PK-like) 82 351 IPR011009 -
Pvu5g0743 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 759 793 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 849 893 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 799 838 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 752 790 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 709 748 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 666 706 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 624 663 IPR001680 GO:0005515
Pvu5g0743 895 SMART WD40_4 578 613 IPR001680 GO:0005515
Pvu5g0743 895 SUPERFAMILY WD40 repeat-like 583 892 IPR036322 GO:0005515
Pvu5g0743 895 MobiDBLite consensus disorder prediction 1 27 - -
Pvu5g0743 895 ProSitePatterns Trp-Asp (WD) repeats signature. 777 791 IPR019775 -
Pvu5g0743 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 715 IPR001680 GO:0005515
Pvu5g0743 895 MobiDBLite consensus disorder prediction 1 49 - -
Pvu5g0743 895 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0743 Pvu-Chr5 12097918 12103279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0743 650 793 Miscellaneous Gene Families AT5G08390 28.082 3.53e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Pvu5g0743 WD40 0.015 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0743 5 12097918 12103279 Pvu5g0743 5 12097918 12103279 ECH
Pvu5g0743 5 12097918 12103279 Pvu11g1646 11 41808084 41808904 PCT