Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0588 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTCTCCGACTCCTCCTCTCGCTCCTCATCCCCCTCCTCCTCTCGCTCATCTCGTTCTCGCTCCCGTTCTCCCTCGCGCTCCAGATCCTTCTCATCCTCCTCCTCCTCTCCCTCCCGCAGCTCCCGTAGCCGCAGCCCTCCGCCGCAGAAGCGCAAAAGTCCAGCTGAAGCAGCAGCAGCAGTTAGGCGTGGTCGGTCGCCTCCACCTCTGTCCAAGAGAGCTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGAGAATCACTTGTTCTTCACGTGGAAAAGCTCAGCAGAAATGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACCGTCAATCTTCCAAAGGGATATGGATATGTGCAGTTCAAGACAAGAGAGGATGCTGAAAAAGCATTATTGTTCATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTTTACCTCCTAGGCAGAAAGTTTCACCACCCCCTAAGGCTTCTGTCGCTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCCAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCAGAGAGAATCTCCTCGAAGAAAGCCTCCTTCACCACGGAGGAGGTCTCCTGTACCTCGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACCCCTCCTAGGAGGCGGCCTGTGTCCCCTGGAAGAGGCCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGATCTCACCTAGAAGGATGCGTGGAAGCCCAGGGCGACGACGTTCACCTCCTCCTCCTCCTCGGCGCCGATCACCACCACCTAGACGAGCTCGCAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGCACTCGCTCTCCAATACGTAGGTCGGCACGTTCACGGTCAAGGTCATTCTCACCTCGCAGAGGTAGGCCACCTGTTAGGCGTGGGAGGTCATCATCGTACTCAGATTCACCAAGTCCTCGCAAGGTTTCCCGTAGATCAAAGAGTCGTAGCCCAAGAAGGCCTTTGAGAGGAAGAGGAAGTAGCAATAGTAGCAGCAGCAGTTCACCACCACCACCACCACCAGCTCGCAAACCATAG 1254 0.5494 MAKPGRGRRSPSGSVSDSSSRSSSPSSSRSSRSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQKRKSPAEAAAAVRRGRSPPPLSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTREDAEKALLFMDGAQIDGNVIKARFTLPPRQKVSPPPKASVAAPKRDTPRTDNASADVDKDGPKRQRESPRRKPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARISPRRMRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPPARKP* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0588 417 MobiDBLite consensus disorder prediction 223 238 - -
Pvu5g0588 417 MobiDBLite consensus disorder prediction 294 365 - -
Pvu5g0588 417 PANTHER BNAA09G56240D PROTEIN 1 401 - -
Pvu5g0588 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Pvu5g0588 417 MobiDBLite consensus disorder prediction 179 417 - -
Pvu5g0588 417 CDD RRM_RNPS1 104 176 IPR034201 -
Pvu5g0588 417 MobiDBLite consensus disorder prediction 11 62 - -
Pvu5g0588 417 MobiDBLite consensus disorder prediction 1 100 - -
Pvu5g0588 417 MobiDBLite consensus disorder prediction 242 272 - -
Pvu5g0588 417 MobiDBLite consensus disorder prediction 202 222 - -
Pvu5g0588 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 174 IPR000504 GO:0003723
Pvu5g0588 417 Gene3D - 9 186 IPR012677 -
Pvu5g0588 417 SMART rrm1_1 103 176 IPR000504 GO:0003723
Pvu5g0588 417 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 401 - -
Pvu5g0588 417 SUPERFAMILY RNA-binding domain, RBD 89 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0588 Pvu-Chr5 7553417 7558427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0588 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.28e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0588 5 7553417 7558427 Pvu5g0588 5 7553417 7558427 ECH