Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0564 ATGTTAATTTTAGTGGGGAGCAAGCAGGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGAGCCTTATGGGTGTGAGTTCCTCTGGAAGGTCTCATTCTGGGGTGAGGAGGGTCTCTTTTTCCAGAGGGAATTGTAAGGGGAGAAAGAGATGGCATTGTTTATCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTATTGCTGACCAAGGAAATTCAGTGTCCCTTGATTCTAACAGTAATAGTAGTAGTAGTAGTAGTAAGGGTGGTGGAGATGATGGTACTGGTTTTGTGCTTAAGCCTCCTCCAAAGCCTGTGTTGAAGGCACCGGACAATAGGGATGACCCCATCTTGGGGCCCTCAAGGACTACTGGGGATGTGGAAGAGAGGAATAAAGTGATTGAATCACTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTGGGGAGTTCTAAGGTGAATGGTGATAAGAATAATGGTTCAGTGAATAAACCAGTAAGGAATAATGCTGGTGCTAGTCCTAGGACTGAGAGACCGGTGAATTCAGCAGCATCTCTGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACTCTGTTGCATCAGTGCAGAAGGTTGTGAAGGAAGTACCAAAGCCTAGTTATAACAAGAATGAAGAGGAGAAGTCTCAAACTAGAGGAGGGGAGAAGGTGGTTTCTCAAACTCGTGCTCCCCAACCACCTTCGAAACCTCAGCCTTTGAAACCTCAACAACCTTCAAAACCACAACCTGCGTTACTATCGAAACCTTCTATAGCTCCCCCGCCTGTCAAAAAACCCGTTGTCTTGAGGGACAAAGGAGCAGCTGAAACATCGGTTAAATCAAAAGAAAAGAAGTCACCCATCTTGATTGACAAGTTTGCTTCCAAGAAACCAGTTGTTGATCCTCTAATTGCTCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCACCTTCCCCGGGAAAATTTAAAGATGATTTCCGGAAGAAAGGTGCTCTGGCTGGGGGAGGACGAAGAAGACGAATTTTGGATGATGAAGATGTGATTCAGGACGCATCAGAACTTAATGTCTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGGCTTCAGGCTGCTAGGGATGCAGCTCCTGTCAAAGTAGAAATTTTGGAGGTTGGTGACAGTGGTATGCTGGTGGAGGAATTGGCATACTGTTTGGCCACCAGTGAAGGTGAAATCCTTGGTTATCTGTACTCCAAGGGGATTAAACCAGATGGGGTACAAACTATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTTGAAGTCATAGATGCAGACCCAGTCAAAGTGGAAGGTTTAGTGAAGAAAAGAGAAATTCTTGACGAAGATGACCTTGATAAACTCAAAGATAGGCCTCCTGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCCTATAAAGTGCAAGTACCTTTTGATGGCAAAACGTTGCCCTGTGTTTTCCTTGACACTCCTGGACATGAGGCATTTGGAGCGATGAGAGCTCGTGGAGCAAGTGTAACAGACATTGCTGTTATTGTTGTGGCTGCCGATGATGGAATTCGTCCTCAAACAAATGAAGCTATTGCTCATGCCAAAGCAGCGGGAGTACCCATAGTCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAGGAGCTTTCTTCAATTGGTTTAATGCCAGAAGATTGGGGTGGCAACACCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATGTGGATGATCTCTTAGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATCGAGGCTGGGCTAGATAAATCAAAGGGACCATTGGCTACATTTATTGTGCAGAATGGCTCCCTTAGACGGGGTGACATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCATTATTTGATGATGGTGGAAAGCGTGTTGATGAAGCTACACCTTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCTATTGCCGGTGATGTATTTGAGGTTGTTGAATCCCTTGATGCTGCACGCGAAAGGGCAGAGACTCGTGCTGAGTCATTGCGAAATGAGCGTATTTCAGCTAAGGCAGGAGATGGCAAGATCACCCTTTCTTCCTTAGCTTCGGCAGTTTCCTCAGGAAAGCTGTCTGGACTCGACTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTAAGAAAAGCTCTGCAGGTGCTACCACAAGAAAATGTCACACTAAAGTTTTTGTTGGAAGCAACAGGTGATGTAAACACTAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTGTGGGCTTTAATGCGAAAGCACCAGGCTCTGTGAAAAGCTATGCTGATAACAAAGCGGTTGAGATTAGATTATACAGAGTTATTTATGAATTAATTGATGACGTACGAAAGGCAATGGAAGGGCTCCTAGAACCAGTTGAGGAACAATTAACAATTGGTTCAGCAGTAGTACGAGCTGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGAAAGGTGCTAAAAGATTGTGGTATTCGAGTCAAGCGGAAGGGAAAAATAGTTCATGTTGGTATTATTGATTCTTTGAGACGAGTGAAGGAAATTGTTAAAGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTGGAAGACTTTGATGATTGGGAAGAGGGTGACATAATTGAGGCCTTCAACACAATTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCAATGTAG 3060 0.4444 MLILVGSKQGTMSSLASPVSLGSLMGVSSSGRSHSGVRRVSFSRGNCKGRKRWHCLSLSVCRYSVTTTDFIADQGNSVSLDSNSNSSSSSSKGGGDDGTGFVLKPPPKPVLKAPDNRDDPILGPSRTTGDVEERNKVIESLGEVLEKAEKLGSSKVNGDKNNGSVNKPVRNNAGASPRTERPVNSAASLKSKTLKSVWRKGDSVASVQKVVKEVPKPSYNKNEEEKSQTRGGEKVVSQTRAPQPPSKPQPLKPQQPSKPQPALLSKPSIAPPPVKKPVVLRDKGAAETSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPSPGKFKDDFRKKGALAGGGRRRRILDDEDVIQDASELNVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDSGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPFDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGNTPMVPISALKGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPLATFIVQNGSLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSIPVQVIGLNNVPIAGDVFEVVESLDAARERAETRAESLRNERISAKAGDGKITLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQENVTLKFLLEATGDVNTSDVDLAVASKAIIVGFNAKAPGSVKSYADNKAVEIRLYRVIYELIDDVRKAMEGLLEPVEEQLTIGSAVVRAVFSSGSGRVAGCMVTEGKVLKDCGIRVKRKGKIVHVGIIDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDIIEAFNTIEKKRTLEEASASMAAAVEGVGVAM* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0564 1019 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 490 663 IPR000795 GO:0003924|GO:0005525
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 321 342 - -
Pvu5g0564 1019 TIGRFAM small_GTP: small GTP-binding protein domain 492 653 IPR005225 GO:0005525
Pvu5g0564 1019 Gene3D Translation factors 904 1000 - -
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 280 302 - -
Pvu5g0564 1019 ProSitePatterns Initiation factor 2 signature. 952 974 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pvu5g0564 1019 Hamap Translation initiation factor IF-2 [infB]. 8 999 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pvu5g0564 1019 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 40 1009 - -
Pvu5g0564 1019 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 40 1009 IPR015760 -
Pvu5g0564 1019 Gene3D Translation factors 666 781 - -
Pvu5g0564 1019 SUPERFAMILY Translation proteins 906 999 IPR009000 -
Pvu5g0564 1019 CDD mtIF2_IVc 909 991 - -
Pvu5g0564 1019 Pfam Elongation factor Tu GTP binding domain 495 655 IPR000795 GO:0003924|GO:0005525
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 155 192 - -
Pvu5g0564 1019 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 797 909 IPR036925 -
Pvu5g0564 1019 Gene3D - 798 903 IPR036925 -
Pvu5g0564 1019 Gene3D - 487 665 IPR027417 -
Pvu5g0564 1019 CDD IF2_eIF5B 493 659 - -
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 75 95 - -
Pvu5g0564 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 666 IPR027417 -
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 216 231 - -
Pvu5g0564 1019 Pfam Translation-initiation factor 2 798 891 IPR023115 -
Pvu5g0564 1019 TIGRFAM IF-2: translation initiation factor IF-2 413 1001 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pvu5g0564 1019 CDD IF2_mtIF2_II 670 764 IPR044145 -
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 243 257 - -
Pvu5g0564 1019 SUPERFAMILY Translation proteins 666 750 IPR009000 -
Pvu5g0564 1019 PRINTS GTP-binding elongation factor signature 494 507 IPR000795 GO:0003924|GO:0005525
Pvu5g0564 1019 PRINTS GTP-binding elongation factor signature 546 556 IPR000795 GO:0003924|GO:0005525
Pvu5g0564 1019 PRINTS GTP-binding elongation factor signature 562 573 IPR000795 GO:0003924|GO:0005525
Pvu5g0564 1019 PRINTS GTP-binding elongation factor signature 598 607 IPR000795 GO:0003924|GO:0005525
Pvu5g0564 1019 Coils Coil 749 776 - -
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 75 134 - -
Pvu5g0564 1019 MobiDBLite consensus disorder prediction 149 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0564 Pvu-Chr5 7109713 7118360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0564 469 889 Eukaryotic Initiation Factors Gene Family AT1G76810 29.006 5.92e-29 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0564 5 7109713 7118360 Pvu5g0564 5 7109713 7118360 ECH