Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0542 ATGGCCCTGCAGATGACTTGGCAGCCGAGTCTCCTGAGTCAGAAACGCAAAACCGGTCCTCCTATAGGGCTTCGTAACCTAGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGCCTTACCTACACTCCTCCCCTCGCCAATTTCTGCCTCACTCTCCAACACTCTTCTCTCTGTGATTTCTCTGCGTCCTCGTGTCCGTTCTGTATACTGGAGAAGCAGATTGCGCGTTCACTGAAATTGGATCTCTCGCACGACGCGCCTTCTAAGATCCAGAGCTGTATCCGGATCTTCGCGGAGCACTTCCGTTGTGGCCGCCAGGAGGACGCGCACGAGTTCCTCCGCTACGTAATCGACGCCTGCCACAATACCTGCCTCCGCCTCAAGAAGCTCCGCCGCAAAGGCGGAGACGCTAATGGCGGCGGCGGTGGAGACGGTGGCGGGAGTACGGTTGTGAAGGAGATTTTCGGTGGCGCCTTGCAGAGCCAGGTGAAGTGTCTGTGCTGTGGATACGAGTCGAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTCCATAGTAACTCTCTTAAAGACTCCATGCAAAAGTTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGTTGTAAGAAATTGGTGGCGGCTAAGAAGCAAATGTCCGTACTTCAAGCACCCAACATCCTTGTGATACAACTAAAGAGATTTGAGGGCATATTGGGTGGCAAGATTGACAAGGCTGTTGCATTTGAAGAGGTTTTGGTCCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCACAGCCAGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTACTCCCCCGAATCTGGTCACTACTATGCTTATATAAAGGATGCAATGGGTCGGTGGTATTGCTGTGATGATTCTAGTGTAACAGTTGCAACCCTGCAAGAAGTTTTGTCAGAAAAGGTTTACATTCTTTTTTTCTCTCGAACTAATCAAAGGCCAGTGTCAAATAGTATTTCTCTTGCTTCAAACGGTGTAAAACCTCATTCCAATGGGAACCAAGCATCTGAATTCCCAAAGGTTGGTGTACCACTGAAAGCTGTGTATGCAAAGTCAAGTTTTGAGCTATCTCCATGGAAGGATATGCCAAGTGTAGCTAAGAATGCTAAAGTACCTTCCAGCTCACGAGTGAAGTTTGACATTAATGGAAGTTCTACTTCCAAAAGAAGTCCTGCTCCTGTAAATGTGAATGGGAAAGTTGATGTTTCTAGGAATCAGCCTTTATTAATAAATGGACATGTTAAAGATTCAGTTTTTTTGGAAAATGGTAAGAAAGATCCTTCACCATTACCCACCAGGAATGGTATTGACAAAAATAAAGTTGATATTGACAAATTCAAAAGAAAGGAGTCATCACTTACAAATGGTCACGGTGATAATCAGATGGTTGATATTCATTCTGTAAAATCGGATCCCAGGGAAGATACTGATAAAAACAGGGTAATAGCAGGGAAAGGTTCTGACAACTTTAAGCTAGGAAAAAATGGCCTCAGCAATAAACCCAAAATATTGGGGAATAAGAGAAAGGTACATGAGGACCCATGCATTTTACTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAATCTTGGGAAAGAGGTGAAGTCATATTTGATATCATGCGGCTGGACAAATGTGGTCTATGAATTTATGCGTTCTATAAAGAAGTTACGTGTACAAGATGGAAATTTAGAGAATGGAGATGAAACAAGGAAGTCGTTAATTAGAGATGCGCAGGTAGCTTTCAAATCAAAGATTCCTGAGTCATTGCGAAAGGATATGATTGAACGAATCCAATCCTTTATCCAAGAAAACAATACAGTTTTAAGGACCTTGATCTGA 1932 0.4379 MALQMTWQPSLLSQKRKTGPPIGLRNLGNSCYLNSVLQCLTYTPPLANFCLTLQHSSLCDFSASSCPFCILEKQIARSLKLDLSHDAPSKIQSCIRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDANGGGGGDGGGSTVVKEIFGGALQSQVKCLCCGYESNKVDEIMDISLDVFHSNSLKDSMQKFFQPEVLDGNNKYKCDSCKKLVAAKKQMSVLQAPNILVIQLKRFEGILGGKIDKAVAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCDDSSVTVATLQEVLSEKVYILFFSRTNQRPVSNSISLASNGVKPHSNGNQASEFPKVGVPLKAVYAKSSFELSPWKDMPSVAKNAKVPSSSRVKFDINGSSTSKRSPAPVNVNGKVDVSRNQPLLINGHVKDSVFLENGKKDPSPLPTRNGIDKNKVDIDKFKRKESSLTNGHGDNQMVDIHSVKSDPREDTDKNRVIAGKGSDNFKLGKNGLSNKPKILGNKRKVHEDPCILLAHDGQSQARVQELKDNLGKEVKSYLISCGWTNVVYEFMRSIKKLRVQDGNLENGDETRKSLIRDAQVAFKSKIPESLRKDMIERIQSFIQENNTVLRTLI* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0542 643 MobiDBLite consensus disorder prediction 402 423 - -
Pvu5g0542 643 CDD Peptidase_C19E 21 333 - -
Pvu5g0542 643 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 13 385 - -
Pvu5g0542 643 Gene3D Cysteine proteinases 16 337 - -
Pvu5g0542 643 SUPERFAMILY Cysteine proteinases 15 334 IPR038765 -
Pvu5g0542 643 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 22 335 IPR028889 -
Pvu5g0542 643 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13 385 - -
Pvu5g0542 643 Gene3D - 552 637 IPR038212 -
Pvu5g0542 643 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 23 38 IPR018200 GO:0004843|GO:0006511
Pvu5g0542 643 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 277 295 IPR018200 GO:0004843|GO:0006511
Pvu5g0542 643 Pfam Ubiquitin carboxyl-terminal hydrolase 22 332 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0542 Pvu-Chr5 6772827 6784279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0542 21 339 Miscellaneous Gene Families AT2G24640 37.538 5.50e-59 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0542 5 6772827 6784279 Pvu5g0542 5 6772827 6784279 ECH