Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0383 ATGAGTGTTATGTATAGTCCTGTTCTCAAGTACTCAGATGTGGAGCATCGGCTAATGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAATACTGTCACCAACCCAATTCTGGACTACAGAGGTATTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTAATTGACAACAATATTCATGACTGTTTCAACGAGGAATCTTTCACAAGTGAGATTCATCAACATTATCCTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCCAAATTGCTACCATCCAACAATGGATGGAGCAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTAAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACAACAGAATGAATATTCTTATGGTGGCTCTCAGTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCAGTGCTTTTGGTAGCTCTTTTGGTGTGGTTAACTCCATGGCCTCAGAGAACCCCATTCAACCTAAATTGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGTTCCCCTGCAGGATTTTTCTCCATTCAAAATGATCTTGCAGCATTGAGAGAAGTAGGTGCCTTTAAAGCCAATGATGTTTCAAATGGACAGGCTACTACATCATCTAGTGGGTTGAGCAGTTCTCTTGCTTTCTCATCTAGGCCATCTTCATGCCTCAAACATATGCCACAAATTGCTGAAAATGGAAATGAAAGCCTTGAAGAAAATTGTGACCAGAGTAGGATCCTAGCTAATGAAGATGGTAACTCAAAGTTCTGCATACCTAGCTTCACCAGTGAAATCTGGGAAAGTTCTTCATTCAATGCCCCCAAAACAGAAAGTGATGACGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAATCAGACTTTGGCTATCAAAATCTTGGTTTGACCCACCATCAGAGCCTACCTAGCTCTTCTACTAAGATGTCATCCATACAGAGGTTTCTTGAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGTTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAATTACAAGACCTTTTCCCAAAGTCAGAAAAGCAAACAAGCACAGCAGACATGTTAGATTTGGCAGTTGAGTACATCAAGGACCTTCGGCAACAAGTTAAGGTTCTCTCAGATTGCAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTCCTCTAGAACTTGTGCCTGA 1314 0.4117 MSVMYSPVLKYSDVEHRLMKNQEMDSSIGNPQQYCHQPNSGLQRYCSAPSSLLASLIDNNIHDCFNEESFTSEIHQHYPPSTSSEMDTMLSKLLPSNNGWSNSEALQEFGSKPVKQEIGESVPQGPPQQNEYSYGGSQLIYQSQQIQGLPNGSSSAFGSSFGVVNSMASENPIQPKLGARNCSNLFRQKSSPAGFFSIQNDLAALREVGAFKANDVSNGQATTSSSGLSSSLAFSSRPSSCLKHMPQIAENGNESLEENCDQSRILANEDGNSKFCIPSFTSEIWESSSFNAPKTESDDEIMFSTSNGLESQESDFGYQNLGLTHHQSLPSSSTKMSSIQRFLEIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSNEKHSSRTCA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0383 437 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 429 - -
Pvu5g0383 437 SMART finulus 365 415 IPR011598 GO:0046983
Pvu5g0383 437 Pfam Helix-loop-helix DNA-binding domain 365 409 IPR011598 GO:0046983
Pvu5g0383 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Pvu5g0383 437 Gene3D - 361 433 IPR036638 GO:0046983
Pvu5g0383 437 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 429 - -
Pvu5g0383 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 425 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0383 Pvu-Chr5 3552495 3555501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g0383 HLH 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0383 5 3552495 3555501 Pvu11g2220 11 49797429 49801552 ECH
Pvu5g0383 5 3552495 3555501 Pvu5g0383 5 3552495 3555501 ECH