Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0307 | ATGACATCTAGTCATCCATTCTTTGATGATATACGAAGCAGATCAAGTGTTGATCCTCCTCAAATGGAAGAGCCAACTGAAATTGGTGAACTCGTGAATGAGCCTCTGCAGACTTCTCTTAAGCCTCATGGGACTGTTACAAGCAGTGTTCGTGAGCTGTTAGAGTGCCCTGTTTGTTTAAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCATGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTACAATTGTCCATATGCTGGTTCAGAATGTTCTGTTATGGGTGATATACCTTACCTGGTGAACCATCTGAAAGATGATCACAAAGTGGACATGCACAATGGTTGTACTTTTAATCACCGTTATGTCAAAACAAACCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTGGGAATGGCTCCTGTCTACATAGCTTTTTTGCGGTTCATGGGGGATGACAACGAGGCCAAGAACTACACATACAGTTTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATTAGGGATAGCCACCGTAAGGTTCGTGACAGTTTTGATGGTCTGATAATTCAGAGGAGCATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTCAAACTAAGAGTAACTGGGAGAATTTGGAAAGAACAGTGA | 915 | 0.435 | MTSSHPFFDDIRSRSSVDPPQMEEPTEIGELVNEPLQTSLKPHGTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVNHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ* | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0307 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 107 | IPR013083 | - | |
Pvu5g0307 | 304 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Pvu5g0307 | 304 | SUPERFAMILY | RING/U-box | 48 | 96 | - | - | |
Pvu5g0307 | 304 | Pfam | Seven in absentia protein family | 98 | 297 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Pvu5g0307 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 109 | 169 | IPR013010 | GO:0008270 | |
Pvu5g0307 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 164 | IPR013083 | - | |
Pvu5g0307 | 304 | CDD | RING-HC_SIAHs | 54 | 92 | - | - | |
Pvu5g0307 | 304 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 8 | 304 | - | - | |
Pvu5g0307 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 56 | 92 | IPR001841 | - | |
Pvu5g0307 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 8 | 304 | - | - | |
Pvu5g0307 | 304 | SUPERFAMILY | TRAF domain-like | 109 | 301 | - | - | |
Pvu5g0307 | 304 | CDD | Sina | 170 | 298 | - | - | |
Pvu5g0307 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | IPR008974 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0307 | Pvu-Chr5 | 2721438 | 2725601 | Wgd |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu5g0307 | 5 | 2721438 | 2725601 | Pvu5g0307 | 5 | 2721438 | 2725601 | ECH | |
Pvu5g0307 | 5 | 2721438 | 2725601 | Pvu11g2163 | 11 | 48881098 | 48886147 | PCT |