Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0301 ATGGAGATGTCTGTTCAACCAGAAAATCCTAATACCAATGGTATATCAGGATCAGGATCATGTCTTTATGATCTCTTTTGTTCAGAAAATCCTAGTTTCAATGCTCACGTTGCAAAAGAACAATGGATGTCTTCTGGTCCACAGAAAAGATTAGACAGTTTGATGCGTCAAGCTGGGAATAGATATTGTGCTGATTGTGGAGCATTAGAGCCAAAATGGGTGTCTTTAAACATTGGAGTATTTATTTGCATCAAATGTTCTGGAATACATAGAAGCCTAGGTGTCCATATATCCAAGGTTCTGTCCCTAAACCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAATTGGGTGGAAATACACTAGTCAACAAGAAGTATGAAGTTCACCTCCCAATTAATAACATAAGAAAACCAAGACCAGATTCTTCTATCGAAGAACGTTCAGATTTCATTAGGAGAAAATACGAGTATCTGCAGTTTTCTGATACTGAGGATAACATGTCTTGTCCCTTCATACCACCACCCCATTCAGGAAGTTCATCAGATTCTCAAATTAGTTACTCAAGAAATCCTTTCACACGAGAAAAAAAACATTGTGATAATAAACCACCAAATAGACATTTTATTGGCAGAACATTTCGAAATAGTCGAGGAAGAAAAGATTGCCATGACTTTAGAGCCAAGAAGACCAACTCATTGGCAGGAATGACCGAATTTGTTGGATTGATAAAGGTGAATGTGGTTAAGGGCACTAATCTTGCTGTTCGTGATGTGATGAGTAGTGATCCTTATGTGACCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCAGATTGCATTCCTCCTCTTAAAATTATTGTGTTGGACAAAGATACTTTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTCAGCTGCAATGGCATATGAAAAATCTTCAGTGAATGAGAGTACAGAAGTTGGAAAATGGATAGCAAGTGGTGACAACAGTCTTCTTAAAGATGGTATAATTTCCCTTGAAGATGGACAAATCAAACAAGAGATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGTTGGAGATTGAACTAGAATGTGTTCCTTTAACTCAGTAG 1203 0.3749 MEMSVQPENPNTNGISGSGSCLYDLFCSENPSFNAHVAKEQWMSSGPQKRLDSLMRQAGNRYCADCGALEPKWVSLNIGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDALVKLGGNTLVNKKYEVHLPINNIRKPRPDSSIEERSDFIRRKYEYLQFSDTEDNMSCPFIPPPHSGSSSDSQISYSRNPFTREKKHCDNKPPNRHFIGRTFRNSRGRKDCHDFRAKKTNSLAGMTEFVGLIKVNVVKGTNLAVRDVMSSDPYVTISLGHQSVKTRVIKNNLNPIWNESLMLSIPDCIPPLKIIVLDKDTFSTDDFMGEAEIDIQPLVSAAMAYEKSSVNESTEVGKWIASGDNSLLKDGIISLEDGQIKQEISLRLQHVERGVLEIELECVPLTQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0301 400 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 242 335 IPR035892 -
Pvu5g0301 400 Gene3D Arf GTPase activating protein 31 171 IPR038508 -
Pvu5g0301 400 ProSiteProfiles C2 domain profile. 227 342 IPR000008 -
Pvu5g0301 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 400 IPR044518 GO:0005096|GO:0005543
Pvu5g0301 400 Pfam C2 domain 245 334 IPR000008 -
Pvu5g0301 400 Pfam Putative GTPase activating protein for Arf 49 165 IPR001164 GO:0005096
Pvu5g0301 400 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 171 IPR001164 GO:0005096
Pvu5g0301 400 CDD ArfGap 51 158 - -
Pvu5g0301 400 SMART C2_3c 245 340 IPR000008 -
Pvu5g0301 400 CDD C2_ArfGAP 243 387 - -
Pvu5g0301 400 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Pvu5g0301 400 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Pvu5g0301 400 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Pvu5g0301 400 SMART arf_gap_3 49 171 IPR001164 GO:0005096
Pvu5g0301 400 Gene3D C2 domain 242 399 IPR035892 -
Pvu5g0301 400 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 3 400 - -
Pvu5g0301 400 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0301 Pvu-Chr5 2650546 2659035 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0301 5 2650546 2659035 Pvu11g2161 11 48868580 48873879 PCT