Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0235 ATGAGAATGTCTCCACAAAGTGGTGTGATTCATTCACTTTTCATCACCATGTTTCTCTCATTTGGGGTGTGTTTTGGTTCTTTCCTAGAAGACACTTATCATCTAACTAACTACCAACATTACTCTATCAAACCAAATAATGAACATTTTGGTAGCATCATGAAAAGGGCCTATGGATCCACCCCTTCTGCAAGGCCTCAAAGAAGGATCAGTGTTGATGACTTTGGAGCCAAAGCTAATGATGGAAGAGATGACACTGAGGCATTTGAGAAGGCATGGAATGAGGCATGTTCTAGAGGGGGTGTTCTTGTAGTCCCAGAAGCAAAAATCTACCATTTGAAGCCAATAACTTTTTCAGGACCATGCCATCCCAACACTGCTTTCAGGGTCTATGGAACAATCAGAGCATGGCCTGTAATATCAGCATATGGAAAACAAAGACTACTATGGATTATGTTTCAGAATCTCACCAATCTTAGAGTTGATGGTGGTGGCACCATCAATGGCAATGGGAGAAAATGGTGGGAGAACTCTTGCAAAACCAATGAAAACCTTCCATGCAAACATGCCCCAACTGCTGTGACATTCTTTGGATGCAACAACTTGATAGTGACAAACCTGAGGTTAAAAAATGCACAGCAAATGCATGTAAGGTTTCAAAAGTGCAACAATGTCACAGCTTCGAATTTGATCCTGAGAGCACCAGGGAACAGCCCCAACACTGATGGAATTCACGTCACAGAGACAAAAAATATAATGATTAGCAATAGTTCCATTGGGACAGGTGATGACTGTATTTCAATAGTGAGCGGGTCCCAGAATGTTCGAGTCACAGATGTTACATGTGGACCAGGGCATGGAATCAGCATTGGAAGCTTAGGGGCTGGTAACTCAAAAGCTCAAGTGTCGAATGTGTTAGTGAACAGAGCCACCATAACAGGAACCACTAATGGAGTTAGAATCAAGACTTGGCAGGGAGGTTCTGGATATGCAAAAAACATAAAATTTGAGAATATAGCAATGAGAAATGTGACAAATCCCATAATTGTAGATCAAAACTACTGTGACCAGGAGAAGCCATGCAAAGAGAAGGTCTCAGCAGTGCAAGTGAGCAACATTGTGTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCAATAAAATTTGAGTGCAGCAAAAGTTTCCCATGCAAAGGAATACACTTTGAAGATGTGGTCTTAACACCACATGGCCATGCTGCCTCTAAAACCATTGCTACATGTCAAAATGTTAGATATGTTAATAGGGGAAAGTTTCTTCCTCCATGCTCTAATTCATGA 1323 0.415 MRMSPQSGVIHSLFITMFLSFGVCFGSFLEDTYHLTNYQHYSIKPNNEHFGSIMKRAYGSTPSARPQRRISVDDFGAKANDGRDDTEAFEKAWNEACSRGGVLVVPEAKIYHLKPITFSGPCHPNTAFRVYGTIRAWPVISAYGKQRLLWIMFQNLTNLRVDGGGTINGNGRKWWENSCKTNENLPCKHAPTAVTFFGCNNLIVTNLRLKNAQQMHVRFQKCNNVTASNLILRAPGNSPNTDGIHVTETKNIMISNSSIGTGDDCISIVSGSQNVRVTDVTCGPGHGISIGSLGAGNSKAQVSNVLVNRATITGTTNGVRIKTWQGGSGYAKNIKFENIAMRNVTNPIIVDQNYCDQEKPCKEKVSAVQVSNIVYQNIRGTSASEVAIKFECSKSFPCKGIHFEDVVLTPHGHAASKTIATCQNVRYVNRGKFLPPCSNS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0235 440 ProSitePatterns Polygalacturonase active site. 279 292 IPR000743 GO:0004650|GO:0005975
Pvu5g0235 440 Pfam Glycosyl hydrolases family 28 103 426 IPR000743 GO:0004650|GO:0005975
Pvu5g0235 440 Gene3D - 56 433 IPR012334 -
Pvu5g0235 440 PANTHER POLYGALACTURONASE 10 438 - -
Pvu5g0235 440 PANTHER - 10 438 - -
Pvu5g0235 440 SMART pbh1 302 323 IPR006626 -
Pvu5g0235 440 SMART pbh1 331 352 IPR006626 -
Pvu5g0235 440 SMART pbh1 272 292 IPR006626 -
Pvu5g0235 440 SMART pbh1 222 248 IPR006626 -
Pvu5g0235 440 SMART pbh1 249 270 IPR006626 -
Pvu5g0235 440 SUPERFAMILY Pectin lyase-like 62 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0235 Pvu-Chr5 2000935 2005462 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0235 5 2000935 2005462 Pvu5g0235 5 2000935 2005462 ECH
Pvu11g0156 11 1202722 1205861 Pvu5g0235 5 2000935 2005462 PCT
Pvu11g2156 11 48735976 48738178 Pvu5g0235 5 2000935 2005462 PCT