Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0230 ATGGTTGCTTCAATGTATGGGAGTCTGGATGTTCTAAAACTTATACTCTCGTGGCCGGGGGCTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTCCATTGTGCTGCGTCAGGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCATCTGGTGCTGACATCAGATGTGTGGATGCTAATGGAAATCGTCCTGTTGATATTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAACGCTTGAAGATCTACTTTCAGATAGTGCGTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTTAATTCATCGTGTTCTGATTCAGCGACTCATTTTTTATCACTTGAAAATGGGTTGCCATCTTCTCCTATGGCTTCCAAGTATACTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGGGGAGACATGTGTGAATATGCTCATGGAGTCTTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGTTGTGCAAGGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGTTCAACTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGCCATGTCTCCATCTCCCTTCGCTCAGCCAATGTCTCCATCTTCAAGTGGCATTAGTCACTCATCTATTGCTTGGCCACAACCGAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGTAGACCTGGATGTGTTGCAAGATTTTAATGGTCAGCAGCACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATCTATTTTCTCCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTATTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCTTCTCCTAGGAATATTGAGCATCCTCTTTTACAGGCTTCATTTGGTGTCTCTTCTCCGGGAAGAATGTCCCCAAGAAGTTTGGAACCAATCTCTCCAATGAGTGCTCGATTATCTGCATTTTCACAGCGTGACAAGCAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTGGGGTCCCCAGTTAACTCCTGGTCGAATTGGGGTTCTCCTCATGGGAATGCAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAGTCCCTTGTGAAGGAATCTCCATCCGAGTTAAAAGAGAAGTTGGCAGGTTCTGGCCCTGTCGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTGGGAGCATGGCTTGAGCAAATGCAGCTCGATCAGCTTGTAGTCTAA 1902 0.4537 MVASMYGSLDVLKLILSWPGADVNFSCGTDRSTALHCAASGGSVNAVDVVKLLLSSGADIRCVDANGNRPVDIIVVPPKLEGLKATLEDLLSDSACDGSVGDCFIPVSVNSSCSDSATHFLSLENGLPSSPMASKYTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSTASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSSSGISHSSIAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPVDLDVLQDFNGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDLFSPEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNIEHPLLQASFGVSSPGRMSPRSLEPISPMSARLSAFSQRDKQQQLRSLSSRDLGAHNPVSIVGSPVNSWSNWGSPHGNAKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSELKEKLAGSGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0230 633 SMART ANK_2a 30 62 IPR002110 GO:0005515
Pvu5g0230 633 Pfam Ankyrin repeats (3 copies) 1 70 IPR002110 GO:0005515
Pvu5g0230 633 Gene3D - 208 271 - -
Pvu5g0230 633 ProSiteProfiles Ankyrin repeat profile. 30 65 IPR002110 GO:0005515
Pvu5g0230 633 ProSiteProfiles Ankyrin repeat region circular profile. 30 64 - -
Pvu5g0230 633 PANTHER UNKEMPT FAMILY MEMBER 1 631 IPR045234 -
Pvu5g0230 633 ProSiteProfiles Zinc finger C3H1-type profile. 213 235 IPR000571 GO:0046872
Pvu5g0230 633 Pfam CCCH-type zinc finger 213 233 IPR041367 -
Pvu5g0230 633 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 631 - -
Pvu5g0230 633 SUPERFAMILY Ankyrin repeat 1 75 IPR036770 -
Pvu5g0230 633 MobiDBLite consensus disorder prediction 588 611 - -
Pvu5g0230 633 MobiDBLite consensus disorder prediction 499 519 - -
Pvu5g0230 633 Gene3D - 1 118 IPR036770 -
Pvu5g0230 633 MobiDBLite consensus disorder prediction 499 522 - -
Pvu5g0230 633 SMART c3hfinal6 243 266 IPR000571 GO:0046872
Pvu5g0230 633 SMART c3hfinal6 208 234 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0230 Pvu-Chr5 1949246 1953750 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu5g0230 Ank_2 1.8e-06 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0230 5 1949246 1953750 Pvu11g2202 11 49570751 49573420 ECH
Pvu5g0230 5 1949246 1953750 Pvu5g0230 5 1949246 1953750 ECH
Pvu11g2202 11 49570751 49573420 Pvu5g0230 5 1949246 1953750 PCT