Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0214 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCTCTTTATTCTCACCACTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTACCCTCTTTCACACTCAAACACCACCAACACATCTCCTCCTTCTCCTCCGCTCAGAGAAGCCCTTCCTCTCATAAGCCTCATAAAGCAGAAGGAGAACAAGAGCTCCAACGCTGGTGGAGAAGCTGAAGAGGAAGGGCTCAAAAGAAGAGACATGGATGAGACCCTTTTGAGTGAAGATGGTGGTGATGAAAGTGTGGCAGTAGCACTGCACATAGGGCTACCTAGAGTGGATGCTTCTGATCTTCTTGGATCAGGGAAGATCTCAGCAGAAATGGGTGAGAAAGGGGAAGTGAGTGTGATTTCTGGACACCCTTTGGACAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTTATTGGTCCTACTCAGTTCTTATGTTCTGTCTGCTCCAAGAGTTTCAACAGATATAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCAGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGAGGACACATGAGAAGAACTGTGGAAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCACGGAGCTGTTCACATTGATTGCATGCAGGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGGGATAGTTCAATGTGA 972 0.4434 MTDPHSNLYAGTFNFMPLYSHHSSFTSQPNHFSSYPLSHSNTTNTSPPSPPLREALPLISLIKQKENKSSNAGGEAEEEGLKRRDMDETLLSEDGGDESVAVALHIGLPRVDASDLLGSGKISAEMGEKGEVSVISGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVHIDCMQEDEAASEIEHDGDSSM* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0214 323 SUPERFAMILY beta-beta-alpha zinc fingers 231 267 IPR036236 -
Pvu5g0214 323 MobiDBLite consensus disorder prediction 70 85 - -
Pvu5g0214 323 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Pvu5g0214 323 Gene3D Classic Zinc Finger 225 299 - -
Pvu5g0214 323 Gene3D Classic Zinc Finger 162 185 - -
Pvu5g0214 323 SMART c2h2final6 273 296 IPR013087 -
Pvu5g0214 323 SMART c2h2final6 163 185 IPR013087 -
Pvu5g0214 323 SMART c2h2final6 247 267 IPR013087 -
Pvu5g0214 323 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 318 - -
Pvu5g0214 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Pvu5g0214 323 Pfam C2H2-type zinc finger 163 182 - -
Pvu5g0214 323 PANTHER ZINC FINGER PROTEIN WIP2 1 318 IPR043584 GO:0003700|GO:0010468
Pvu5g0214 323 MobiDBLite consensus disorder prediction 63 85 - -
Pvu5g0214 323 SUPERFAMILY beta-beta-alpha zinc fingers 157 185 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0214 Pvu-Chr5 1755567 1757797 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g0214 zf-C2H2_6 1.9e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0214 5 1755567 1757797 Pvu11g2214 11 49735662 49738596 ECH
Pvu5g0214 5 1755567 1757797 Pvu5g0214 5 1755567 1757797 ECH
Pvu11g2214 11 49735662 49738596 Pvu5g0214 5 1755567 1757797 PCT