Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0160 ATGGCAACAAGAATCCCAAGATTTGTTGGCTTCTTCATGACCCTTTTCACCATGGCAAGTGCACAATCTCTGAACTATGTGAATGATGACTGCCACAACTCAACAACAAAAGAACAAGCCATAACCCTAGCATTCAGAACCAACCTTAACAGCACCCTCTCAAGGCTCTCTTCTGATGCTGCAACAAGCAAGGGTTACAACCACACCACCACAGGAAATGGCAGCACACCGGTTGATGATGATGCTGTGTATGGCCTCTATGACTGCAGGGGTGATGTCACAGGACCCTTCTGCCAGTTCTGTGTCTCCACTGCAGCCTCAGAGATTCTCCAGCAATGCCCTAACAGATCCTCTGCTGTCATATGGTACAACTACTGCATTCTCAGGTACTCAAACAACAACTTCTTTGGGAACCTTACCACAACCCCATCATGGGAAATTGTGGAGGCCAAGAACAGCACTGACCCAGAAGAGCTTCAGAAAGCTGAGAGCTACATGCAAAGCTTGAAGAGAGAAGCCACTGTGGAGAGCAACAAGTTGTATGCAATGGGAGGGTTCAATTTGAGTGATGGTGAGGAAAGGTATGGGTTGGTGCAGTGCAGCAGGGACCTCACCAATGATGAGTGCAGCCAGTGCTTGGATGCCATGATACAAAAAGTTCCTCAGTGCTGTGGTACAAAGAGATCATGGCAGGTTTTGGCTCCAAGTTGCCTTATAAAGTATGATGATTTCATGTTCTACCAGATTACAGATCAAACTTCTTCTCCTTTGCCTAATCCAGCTAAGAAGGGAGGTTCCATTGGCTCAAAAACATTGATCATAATCACTGTGAGTGTATTAGTGGCACTGATTTTTCTTTGTTGCTCTATCTACTACTTGTGGAGGAAGTATGTGACAAATAAAGATGAATTGATATCAGTGAACACCCTCAGATCTTTTCATGGCTATGTTCAAAGAGAAGAACCACTGAATGTAGACCTTCCAACAATCCCTTTAATCTGGATTCAACAGAGCACTAATTACTTTTCAGAGTTCTCTAAATTGGGAGAAGGTGGATTTGGTTCTGTTCACAAGGGTAATTTAGAAGATGGAACAGAAGTTGCTGTCAAAAGACTCTCTAAAGCATCTGGTCAAGGTTTGGAGGAGTTCAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTCTTGGGGTGCTGCATTGAGGAAAATGAAAAGCTGCTTGTGTATGAGTACATGCCAAATTCTAGCCTTGACTCTCACCTGTTCAATGAGGAGAAAAGAAAGCAACTAGATTGGAAGTTAAGACTGAGCATTATTAATGGAATTGCCAAAGGACTTCTGTATCTTCATGAAGACTCCAGACTTAGAATAATACATAGAGATCTGAAAGCCAGCAATGTACTTTTGGATCAAGAGATGAATCCAAAAATATCAGATTTTGGGTTGGCAAGAACATTTGAAAAAGGCCAGAGTCAAGAAAGTACAAGGAGAGTTATGGGCACCTATGGATACATGTCTCCAGAATATGCTATGGAAGGATTATATTCAGTAAAATCTGATGTCTTCAGCTTTGGAGTTCTTCTGTTAGAAATCATATGTGGGAAAAGGAATAGTGGATTCCATCTTTCAGAACATGGTCAAAGCCTTCTTGTACATAGTTGGAGACTTTGGGGTGAAGGAAAAAGCTTGGAAATGTTAGATCCAATGCTGGAAAAGACATACAAAGGCAGTGAAGTTATGAAATGCATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCAGCTGACAGACCAACCATGTCCACAGTTGTTGTCATGCTGGCAAGTGACACAATGGCACTTTCCAACCCTAATCATCCTGCATTTTCAGTTGGAAGGAAGACCAAGGAAGAAGAATCAACATCAAAAGGATCCAAGGATCCTTCTGTTAATGATGTAACAATATCAAACATTTTACCAAGGTAG 1983 0.4206 MATRIPRFVGFFMTLFTMASAQSLNYVNDDCHNSTTKEQAITLAFRTNLNSTLSRLSSDAATSKGYNHTTTGNGSTPVDDDAVYGLYDCRGDVTGPFCQFCVSTAASEILQQCPNRSSAVIWYNYCILRYSNNNFFGNLTTTPSWEIVEAKNSTDPEELQKAESYMQSLKREATVESNKLYAMGGFNLSDGEERYGLVQCSRDLTNDECSQCLDAMIQKVPQCCGTKRSWQVLAPSCLIKYDDFMFYQITDQTSSPLPNPAKKGGSIGSKTLIIITVSVLVALIFLCCSIYYLWRKYVTNKDELISVNTLRSFHGYVQREEPLNVDLPTIPLIWIQQSTNYFSEFSKLGEGGFGSVHKGNLEDGTEVAVKRLSKASGQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSSLDSHLFNEEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRIIHRDLKASNVLLDQEMNPKISDFGLARTFEKGQSQESTRRVMGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFHLSEHGQSLLVHSWRLWGEGKSLEMLDPMLEKTYKGSEVMKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALSNPNHPAFSVGRKTKEEESTSKGSKDPSVNDVTISNILPR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0160 660 Pfam Domain of unknown function (DUF3403) 615 660 IPR021820 GO:0004674
Pvu5g0160 660 SUPERFAMILY Protein kinase-like (PK-like) 327 629 IPR011009 -
Pvu5g0160 660 Gene3D - 144 246 IPR038408 -
Pvu5g0160 660 Gene3D - 23 135 IPR038408 -
Pvu5g0160 660 Gene3D Phosphorylase Kinase; domain 1 309 417 - -
Pvu5g0160 660 MobiDBLite consensus disorder prediction 645 660 - -
Pvu5g0160 660 CDD STKc_IRAK 348 613 - -
Pvu5g0160 660 Pfam Protein tyrosine and serine/threonine kinase 346 612 IPR001245 GO:0004672|GO:0006468
Pvu5g0160 660 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Pvu5g0160 660 Pfam Salt stress response/antifungal 31 132 IPR002902 -
Pvu5g0160 660 Pfam Salt stress response/antifungal 161 242 IPR002902 -
Pvu5g0160 660 SMART serkin_6 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0160 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Pvu5g0160 660 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Pvu5g0160 660 MobiDBLite consensus disorder prediction 624 660 - -
Pvu5g0160 660 ProSiteProfiles Gnk2-homologous domain profile. 25 135 IPR002902 -
Pvu5g0160 660 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Pvu5g0160 660 MobiDBLite consensus disorder prediction 630 644 - -
Pvu5g0160 660 PANTHER PROTEIN KINASE DOMAIN 16 657 - -
Pvu5g0160 660 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0160 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0160 Pvu-Chr5 1347215 1351873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0160 9 660 Receptor kinase-like Gene Family AT4G05200 41.997 2.80e-173 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu5g0160 PK_Tyr_Ser-Thr 9.3e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0160 5 1347215 1351873 Pvu11g2026 11 47084720 47090521 PCT