Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0138 ATGAGTCAAATAACACATGACATTGATGACAATGTGCATGGTGAGGATCAGACTGGGTCACAGTTGAACGATGAGGGTAATGGAGGAGGTGTTGTTCTGAAGAAAGGACCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATAAGCATGGAGAGGGGAATTGGAATGCAGTTCAGAAGTATTCAGGCCTTTCTCGTTGTGGAAAAAGTTGCCGACTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGTTTGCCACTTTATCCTCCTGAAATAGTTATGCAAGCATTTCAAGATAGTAAGCATGGCCAAGGTACTGGTGAAATCAATGATGGAGATGGATGCCACCATGATTTCATGGAGAAAAACAATTATGAGATGCATGATGCAATATTTGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTGAGCTTTCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCGACATTACCTAATCAGGATCATCTTCAAGAGACATCAGTGTCTTTTATTGGTTCCAATGAATTGAACACTAATGGGTTTTATCCATTCAACCACTTTAAGGATAATACTTCTGGTAAGATTGCGGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATTTGTTACAGCCATTCATTATCGAATGACAATTACTCTACTTCTAAGCCGACTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGTTAGCTGGGGTTCCTCTCCCCCGCCTCCATTGAATGAGTCTATTGATGTTTTAATTCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCGCCACTCAGTTGTTGCTTCCTTAATGAATTTCTTTATCAGCAGGCGAAGGCTCTCAATTATTCAAAGAATAATTGGTCTGACAAGAGTTCAAGTTCATCCATTGCAACTCCCGTTGACAGAGCTGAGAGCTCGGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTTAATGAGCATCCTGTTGTTGGCACCAATGGAAAGTCGTGGGATGGATGGGAACCTTTTCAGACCTTTAGTGGCAACAATGAGAAATTGCAATCAGTTGATCAAGTTTTGGCCCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTACTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCATGACGGCATGAACCACGCTGGTATGATTGATGCTAGTGATGATGTCAAGAGACAGTAA 1536 0.431 MSQITHDIDDNVHGEDQTGSQLNDEGNGGGVVLKKGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEIVMQAFQDSKHGQGTGEINDGDGCHHDFMEKNNYEMHDAIFDSLKENQGILPFVPELSDISANSILPNVLGSPPYCNFLPSTLPNQDHLQETSVSFIGSNELNTNGFYPFNHFKDNTSGKIAESFGLHSPLDHGASSYGSICYSHSLSNDNYSTSKPTSEAVKSELPSLQYPETEFVSWGSSPPPPLNESIDVLIHSPQPPYALDSGSSPLSCCFLNEFLYQQAKALNYSKNNWSDKSSSSSIATPVDRAESSALNMYETEWEDYADPVSPFGATSILNEHPVVGTNGKSWDGWEPFQTFSGNNEKLQSVDQVLAPKSENQSMSLLNLTWPDVLLASDWHELYSEHDGMNHAGMIDASDDVKRQ* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0138 511 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Pvu5g0138 511 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Pvu5g0138 511 MobiDBLite consensus disorder prediction 1 30 - -
Pvu5g0138 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Pvu5g0138 511 ProSiteProfiles Myb-like domain profile. 33 82 IPR001005 -
Pvu5g0138 511 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 491 - -
Pvu5g0138 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Pvu5g0138 511 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Pvu5g0138 511 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 491 - -
Pvu5g0138 511 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Pvu5g0138 511 Gene3D - 34 87 - -
Pvu5g0138 511 CDD SANT 37 82 IPR001005 -
Pvu5g0138 511 Gene3D - 90 136 - -
Pvu5g0138 511 SMART sant 34 84 IPR001005 -
Pvu5g0138 511 SMART sant 87 135 IPR001005 -
Pvu5g0138 511 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0138 Pvu-Chr5 1115986 1120263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0138 1 508 MYB Transcription Factor Family AT5G06100 39.619 5.80e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g0138 Myb_DNA-binding 9.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0138 5 1115986 1120263 Pvu11g1990 11 46789437 46794291 PCT