Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0126 ATGGTCAACACCCTTTGTAGGCAAAGGGTTCTATATCAACTAAATGTTGTTTCCAGTACCCTTGAAACCACTGAGCCGAAAGCTCTCATCATGGATATAGATCTCCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGAAGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCACGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCTATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAATTTGCTTGCTCCAGATATGGAACAAAACGAGAGTATGATAAATCATTTAATCGACCACGTGCTCGACAGAACAAACAAGATTCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGGCAGATGGAAAATGGGTTATACATAGCTTCGTGAAAGAGCATAATCATGAGCTTTTACCCGCTCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGCCGGAATTTGGGCCTGGAGTCAGGGGAGGCTAAAATCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAGAAATCTTTTATGGATTGATGCTAAAAGTAGGAATGACTATATCAACTTTTGTGATGTAGTGTCATTTGATACCACATATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACACTACTTGGATGTGCCTTGATATCAGATGAAAGTGCTGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCGAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGTCATTGTGTTTGCTTATGGCATGTATTAGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATTTATAGGTCCCTGACCAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGATAAGTGTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGAAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTGCATAAGAAGACCTCTGTCCAAGATTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAATTGGCTACCTTAAAAACTCCTTCACCTTTGGAGAAGAGTGTTGCAGGGATTTTCACGCATGCTGTATTCAAGAAAATTCAAGCTGAGGTTGTAGGTGCAGTTGCCTGTCATCCTAAAGCTGACAGGCAGGATGAAACAACCACTGTTCACAGGGTTCATGACATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATCAAGTGAAGTTCGAGTTGTCTTGTATATGTAGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACAGTCAGTGTTCCCGTCTCAATATATTTTGAAGCGGTGGACAAAAGATGCAAAGCTTAGGAATATAATTGGAGAGGAATCTGAACACATGCTGAGTAGGGTGCAACGGTACAATGATTTATGTCAGCGATCACTAAAGCTCAGTGAAGAGGGATCATTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCGCTACATGAAGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAAAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACACAAAGTAGAAATATGAGTAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCGGAAGTGATGACAGTTGGGGCACTAGACAACTTACAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGCACACAGCAGAGCGTGCAAGGAATGTTGAACTTAATGGGACCAACCCGTGATGATTACTATGGGAATCAACAGACTCTTCAGGGGCTGGGGCCAATAAGTTCGATACCAACCAGTCACGATGGTTATTATGGTGCACATCAGGGTATTCCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATAGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCAAGACATGCATGA 2622 0.3917 MVNTLCRQRVLYQLNVVSSTLETTEPKALIMDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVEAGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRADGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKIMLDFFIQMQNMNSNFFYAVDLGEDQRLRNLLWIDAKSRNDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDKCELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGIFTHAVFKKIQAEVVGAVACHPKADRQDETTTVHRVHDMETNKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGQSVFPSQYILKRWTKDAKLRNIIGEESEHMLSRVQRYNDLCQRSLKLSEEGSLSQESYSIAFHALHEAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNMSKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGIPGLAQLDFLRTGFTYSIRDDPNVRATQLHEDPSRHA* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0126 873 ProSiteProfiles Zinc finger SWIM-type profile. 598 634 IPR007527 GO:0008270
Pvu5g0126 873 Pfam MULE transposase domain 318 410 IPR018289 -
Pvu5g0126 873 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 808 IPR031052 GO:0006355
Pvu5g0126 873 Pfam FAR1 DNA-binding domain 119 221 IPR004330 -
Pvu5g0126 873 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 77 808 - -
Pvu5g0126 873 MobiDBLite consensus disorder prediction 708 736 - -
Pvu5g0126 873 MobiDBLite consensus disorder prediction 162 192 - -
Pvu5g0126 873 MobiDBLite consensus disorder prediction 708 756 - -
Pvu5g0126 873 SMART 26again6 609 636 IPR006564 GO:0008270
Pvu5g0126 873 Pfam SWIM zinc finger 606 632 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0126 Pvu-Chr5 999557 1003953 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu5g0126 FAR1 3.6e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0126 5 999557 1003953 Pvu11g1946 11 46378238 46384320 PCT