Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0125 ATGGGGTCTCAAGGTGGTGGTGATAATAATGAAAAACATTCACTACACCACTCTTTGGTGCGAAAAAATTCCTTGTATGGTCTCACACTCAATGAAGTTCAGAATCAATTAGGTGACACAGGAAAACCACTGAGTAGCATGAACATTGATGAGCTTCTAAAAATTGTGAACACTGCTGAAGCAAACCAATCTACTATTGTGGCTAGTTTTTCCTTAACTAGTTCTCTAAGTAAGAAAACTGTTGATGAGGTTTGGAGAGACATACAAGGAAGCAAAGACAGTAAGCAGAATAAGTGTCAAGAAACACAACCTACATTGGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGAGTTGTTGTTGAACCATCTTCTACTCCATCTGTTGATCCAAATGTGGTGACACCACAATTTCCTCAACATGGTCCTTGGATGCAGTATCCACAAGCACAATACCAACTTTCACAACAAGGTTTAATGGGAATTTATATGACTAGTCAGAACATAACACAATCATTACACACACAAGGTAATGTTACATCAGATGGTGAGGTGGCATTGTCTTCACATGTTATGGGAAGCTTGACAAATACTAGGAGACATGGTCGAAAACGAGGCACATCAGAAGATATTGTAGACAAGACCTTTGATAGGAGACAAAAAAGGATGATCAAGAATCGAGAATCTGCTGCACGTTCTAGAGCAAGGAAACAAGCTTACACAATTGAATTAGAGCATAAAGTATTGCGTCTAGAAGAAGAAAATGAAAAGCTGAGGAGGCAAAAGGAGGTAGAGAACATATTATCAAGTGTGCCACCTCAAAAACCAAGATATCGTATTCATCGAAGTGCATCAGCTTCATTTTGA 870 0.3908 MGSQGGGDNNEKHSLHHSLVRKNSLYGLTLNEVQNQLGDTGKPLSSMNIDELLKIVNTAEANQSTIVASFSLTSSLSKKTVDEVWRDIQGSKDSKQNKCQETQPTLGEMTLEDFLVKAGVVVEPSSTPSVDPNVVTPQFPQHGPWMQYPQAQYQLSQQGLMGIYMTSQNITQSLHTQGNVTSDGEVALSSHVMGSLTNTRRHGRKRGTSEDIVDKTFDRRQKRMIKNRESAARSRARKQAYTIELEHKVLRLEEENEKLRRQKEVENILSSVPPQKPRYRIHRSASASF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0125 289 Pfam bZIP transcription factor 218 262 IPR004827 GO:0003700|GO:0006355
Pvu5g0125 289 CDD bZIP_plant_BZIP46 219 264 - -
Pvu5g0125 289 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 13 287 IPR043452 GO:0003700|GO:0045893
Pvu5g0125 289 Gene3D - 218 270 - -
Pvu5g0125 289 SUPERFAMILY Leucine zipper domain 219 264 IPR046347 GO:0003700|GO:0006355
Pvu5g0125 289 SMART brlzneu 215 271 IPR004827 GO:0003700|GO:0006355
Pvu5g0125 289 Coils Coil 242 269 - -
Pvu5g0125 289 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 217 262 IPR004827 GO:0003700|GO:0006355
Pvu5g0125 289 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 222 237 IPR004827 GO:0003700|GO:0006355
Pvu5g0125 289 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2-RELATED 13 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0125 Pvu-Chr5 993270 996579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0125 17 289 bZIP Transcription Factor Family AT3G56850 48.829 7.50e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu5g0125 bZIP_1 3.7e-13 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0125 5 993270 996579 Pvu5g0125 5 993270 996579 ECH
Pvu5g0125 5 993270 996579 Pvu11g1942 11 46338494 46343223 PCT