Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1622 ATGGATCCTCCACCTCTTTCTGCCGCAACTATCATCACTACCACCACTCATAAAAATCATCCTGATTCCATAGATTCTTCATCTCCACGTTCCCGAAATGCAGAAACATGGAATGATGAGAATTTACCGGTCGTTCCTGGCGTCAAGCTGCGCCTCATGTGCAGCTATGGTGGCCACATCATGCCTCGCCCTCATGACAAGACTCTCTGCTATGTCGGCGGTGACACAAGGATTGTGGTGGTGGACCGCCACTCTTCGTTGAAAGATCTGTGTGCGCGGCTTTCTCGAACCATTCTCCACGGAAGACCCTTCACGCTCAAGTACCAGCTTCCCAATGAAGACCTTGATAACCTCATCACTGTGACCACTGATGAAGATCTTGACAACATGGTGGAAGAGTATGACCGAATCACGGCGAAAGGTACGGCTTCTTCACGGCTCAGGGTGTTCCTGTTCTTCACCAAACCTGAGGCCACAGTTTCAATGGGGTCACTGCTTGATGATGTGAAGTCAGAGACATGGTTTGTTGATGCACTTAACCACTCTGGAATGTTAAACAGGGTAGTTTCAGATACTGCTGCAGGGGACTCTTTTGTGAACCTTGATGGTGTTGGTGGTGGTGTTAGTGCTAGTGGTTCAAACAACAACTTGGAGGCTTTGCCTGATACTAACAATAACAAAGCTAAGAACTTGCCCGATGTGGTGCAATCAACTCCTGGTTCACCAATGATGGAGAACAGTTCTTCTTCTTCTCCTTCTTTCTCTCCTTCTCTGGCAAATCTTCCTCCCATTCGGGTACGTGTTGATGACAATAGTAGTAGGCTTCAACAAGAGAACAAGGTTGGAGGGCTGGTGGAGGAGCAGTTTGCTCAGATGACCATTGCAAGTGGGGTGAAGCAAGATGATGGGTTGGGGAGTGTGGCTTCTTCTGCTGTGGCTGTGCCTGCAATTCCCTCACCTATGACTATGCCATCTCTTGGGGTGGTTGCTACCAGTGATAATGCGATGAATAGAGTTGTTTCGGAGGATGAGAGATCAGATCCCGGGTTTCGGAAGCCCCCTTTACCATTGCAGCTTGTGCAGCCAAGGACTAGTGGTGGTATGGGTTTACCTTCTCCTGATTCAGTTGCAAGTGATAGTAGTATTGCATCTGCAAATTCTTTCTCCAAGACTGTTTACTATCAAGATCAAGTCCAAGCTGCACTACTAGACAACAAAGTACTATCTGATCAGGTGATTCAGGTCCATGGTGGACAAGTTCAGGATTCTGGCTACATATTACCCCAACAATTAGATCAAAATAGGCAACTCCAGCAGCAAAAGCCCTTGGTCCATGCCAGCTCTCACTACATCCACCACCCTGCAGCCACAGGGCCAATACCAGTTTCATCATACTACCCAGTTTATGCCCCACCACCACAACAACAACTTCACCCTCCAATTGCTCAGCAACAGTACCCATTTTATGTGATGCCTGTAGGACACACACAAGTAACACAGCCATACAACATGGCCTTGCAGACCAATATGGGTGACCCTAATGTGTTAGCCTCAGGCAGGACCCTAATACCACAAAGTGCTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCTATCTACCCCACAAAATCAGTTACTCCTATACCTGAGGTGACTCCAAGTGTTTACAAGGCTCCTCCTTTAACCTCAAATCCTGCATATGCTCCAATACCTCCCAACCAATTTCAGCCACAGTATGTGGGGTTGCCTCAGTTCCATCATCCACCACAGTCCACTGCTGTGGCTCCCTCTAGTACTACTACTAATTATGGTTATGAATATGGTGGCCAAGGCCATGTGCAAGACCAAGTATACTACACCCAACAACAAACCACTACTTCTCCTCCATTTCTTCCTCAGTACCAATCCATGACCCATGCTGCAGCTGCTGCAGCAGTATCAGATGCTTCAAAACAGTTTCCTGCAGACAACATTCAGCAGCAAAATAGAGCATCACAGCCAGTATGA 2010 0.4761 MDPPPLSAATIITTTTHKNHPDSIDSSSPRSRNAETWNDENLPVVPGVKLRLMCSYGGHIMPRPHDKTLCYVGGDTRIVVVDRHSSLKDLCARLSRTILHGRPFTLKYQLPNEDLDNLITVTTDEDLDNMVEEYDRITAKGTASSRLRVFLFFTKPEATVSMGSLLDDVKSETWFVDALNHSGMLNRVVSDTAAGDSFVNLDGVGGGVSASGSNNNLEALPDTNNNKAKNLPDVVQSTPGSPMMENSSSSSPSFSPSLANLPPIRVRVDDNSSRLQQENKVGGLVEEQFAQMTIASGVKQDDGLGSVASSAVAVPAIPSPMTMPSLGVVATSDNAMNRVVSEDERSDPGFRKPPLPLQLVQPRTSGGMGLPSPDSVASDSSIASANSFSKTVYYQDQVQAALLDNKVLSDQVIQVHGGQVQDSGYILPQQLDQNRQLQQQKPLVHASSHYIHHPAATGPIPVSSYYPVYAPPPQQQLHPPIAQQQYPFYVMPVGHTQVTQPYNMALQTNMGDPNVLASGRTLIPQSAVTSAAYKDGTPPIYPTKSVTPIPEVTPSVYKAPPLTSNPAYAPIPPNQFQPQYVGLPQFHHPPQSTAVAPSSTTTNYGYEYGGQGHVQDQVYYTQQQTTTSPPFLPQYQSMTHAAAAAAVSDASKQFPADNIQQQNRASQPV* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1622 669 MobiDBLite consensus disorder prediction 15 38 - -
Pvu4g1622 669 SMART PB1_new 64 154 IPR000270 GO:0005515
Pvu4g1622 669 Gene3D - 67 153 - -
Pvu4g1622 669 SUPERFAMILY CAD & PB1 domains 65 162 - -
Pvu4g1622 669 MobiDBLite consensus disorder prediction 646 669 - -
Pvu4g1622 669 CDD PB1_UP2 53 152 - -
Pvu4g1622 669 MobiDBLite consensus disorder prediction 212 261 - -
Pvu4g1622 669 Pfam PB1 domain 66 152 IPR000270 GO:0005515
Pvu4g1622 669 MobiDBLite consensus disorder prediction 212 258 - -
Pvu4g1622 669 MobiDBLite consensus disorder prediction 341 378 - -
Pvu4g1622 669 PANTHER OS05G0427100 PROTEIN-RELATED 1 662 - -
Pvu4g1622 669 MobiDBLite consensus disorder prediction 653 669 - -
Pvu4g1622 669 ProSiteProfiles PB1 domain profile. 49 152 IPR000270 GO:0005515
Pvu4g1622 669 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1622 Pvu-Chr4 43489141 43491734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1622 49 202 MAP Kinase Kinase Kinase AT1G16270 37.736 1.03e-25 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0331 7 2533458 2536212 Pvu4g1622 4 43489141 43491734 ECH
Pvu4g1622 4 43489141 43491734 Pvu4g1622 4 43489141 43491734 ECH