Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0583 ATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCGAGTTCTCAGATGGGGTATAAGATTCAGGCCAACTCTGCAACCATGAATGCTTGCGGTGGCTTAAAGAAAAAAGAAGTTGAAATTCCCTATACTGAAAACTCTGAGCAACCACAGAATTATTCTGATTCAAGGGATAGCGAACAAGAGTTCCCACATAATAATAATCAGCAGGAAAATGTGTCAAAAGTAAATACCAAAACTGTGGAAAATAATACAGAGAGTAGCAGTACAGATGAAGATAAAATCTTCAAGAAACCAGACAAGATTCTTCATTGTCCCCGATGCAACAGTTTAGACACTAAATTCTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACGATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCAGCACATTATTGTATCTTGTGATGGAGTTCCAACTACAAACGACTCTTCTTGTCACCAACTTGTCACAACTCTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGAAAAAGGGGAGGAGGAAGTATCCCTCTGTGCATCAGCATCTATGACCAATGCTTGTACTGCAAGAAACACATTAACTGAACCTGCTGCATCAAAACCTCTGCAGTGTTATCCTGCTCCTCCGTGGATAATCCCTTGGAATCAAGATTGGAACAATGCTGCTTCCACTGCATCAGTTCAACCCTCTTCACTACACATGTGTAACCCTTATAGTGCCGACCCCGCTTCAATGCAGTGGTGTCCTACACCAATGATGGCTGTTCCAACCATCTACCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGACAACCTATGTGGGGTGGTGGAACAGGAGCAGTGTCAATGGGTTTCAATGCCTGCCTTTCACCCACTTCCTCTACCAGTAATAGCTGCTGCTCGGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAACAATGTTTCAACAGATGAAGAAAAATCAGACATGTGTGTGTTGGTTCCAACGACTCTTAGAATTGATGATCCAAACGAGGCTGCAAAATGTCCTACATTTGCTTCATCAGGACTCAATCCTGAAAACCAGCAATGTGTAGCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGACAAAGAGTGTGTGTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAAGAGGGCATATAA 1353 0.4383 MSNKDPGIRLFGRKIPLPESQIPASSQMGYKIQANSATMNACGGLKKKEVEIPYTENSEQPQNYSDSRDSEQEFPHNNNQQENVSKVNTKTVENNTESSSTDEDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYQHIIVSCDGVPTTNDSSCHQLVTTLQSAAVFRSSTDNEKGEEEVSLCASASMTNACTARNTLTEPAASKPLQCYPAPPWIIPWNQDWNNAASTASVQPSSLHMCNPYSADPASMQWCPTPMMAVPTIYPPSFPLQFVPGSYWGGQPMWGGGTGAVSMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNNVSTDEEKSDMCVLVPTTLRIDDPNEAAKCPTFASSGLNPENQQCVAEGTISKRAKPREDKECVLGVSQILEANPAAISRAHAFQEGI* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0583 450 PANTHER CYCLIC DOF FACTOR 3-LIKE 225 448 - -
Pvu4g0583 450 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 225 - -
Pvu4g0583 450 PANTHER CYCLIC DOF FACTOR 2 225 448 IPR045174 GO:0003700|GO:0006355
Pvu4g0583 450 PANTHER CYCLIC DOF FACTOR 2 1 225 IPR045174 GO:0003700|GO:0006355
Pvu4g0583 450 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Pvu4g0583 450 MobiDBLite consensus disorder prediction 51 104 - -
Pvu4g0583 450 SUPERFAMILY Nucleoside hydrolase 141 269 IPR036452 GO:0016799
Pvu4g0583 450 MobiDBLite consensus disorder prediction 76 96 - -
Pvu4g0583 450 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Pvu4g0583 450 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Pvu4g0583 450 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0583 Pvu-Chr4 6941656 6944670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0583 5 448 C2C2-Dof Transcription Factor Family AT5G39660 32.863 1.31e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu4g0583 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0583 - - pvu:PHAVU_004G054000g 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1105 1 27221418 27224141 Pvu4g0583 4 6941656 6944670 PCT