Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0540 ATGGCACGTTTCATCTATAACACAAAACCCCTGCACAGAAAACTACTTCTCCTCAATATATCCTTCATTTTCCTCATCTTTCTCTTCCTCAGTGCCTATCTCCACCCTTCTACTTCCAATGTTCATGCCTCCACAAATGTCTTCAACCGTGCTAGAATGCTCACTGACATCAGTGTTGATGGTTGCACTGACCTTCACAAGTACTTGGATAATGACTCCAAGTGCTTATATGTCAAATCCCACGTTCACTGCAGGTCAAAAGGGTATATAAATTATCTCCAAATCTTTTACTGCAGCTTTGGACATTCCCCAGTATTGGGTCATGCCCTGCTTATACTGTGGCTTGTGATCTTGTTTTATCTTTTGGGAGATACAGCTTCAAATTACTTTTGTAGTAATCTAGAAGGTCTGTCTGACATCTTGAGACTATCCCCCACCATAGCTGGGGTAACCTTGCTTTCTTTGGGAAATGGTGCCCCTGATTTTTTTGCAAGTGTTGTTTCTTTCACAAGTTCCAATGACGGTGCAGTTGGCCTCAATAGCATTCTGGGAGGGGCATTTTTTGTGTCCAGTGCTGTTTTGGGGATCATAAGTTTTCTTGTTAGTTCAAATGAAACTGCAGTGGACAAGGCTAGTTTCATTAGAGATGTCATTTTCTTCCTTTTCTCACTTTTCATTCTCCTTGTCATCATTTCTATTGGTAAAATCAGCTTGTTGGGTTCAATATTCTATGTTTCTATTTACTTCCTCTATGTCTGTGCTGTCTCTGCCACACATTTCATCTATGGAGAGGACAGGACAGAAGGGGAACTTGTCTCATCTTCTGATGACTTGACTGAGTCAGGCATACCCTTGTTGGGGTGTGTTGATGATGAGAAACCAAATGTATCAAATAAAGAGGTAATCGAAGAAGAAGGGGACAAGCAAGAGGGTTTTGGTAATGATTCTTTTGACCTTACTTACTTGACCAAATTTGTACATGTGCTAGAGCTACCTCTTTCCTTGCCAAGAAGGCTTACTATACCTGTTGTGAGTGAGGAAGGTTGGTCAAAACCATATGCTGTTATATCTGTGACTTTGGCACCAGTGTTGTTTGCAGCTCTTTGTAACACCCAAATGGAAAATGGGAGTTCAAGGAGTAGTCTTGTTTCATACTTGACAGCTGCTTTAATTGGCATTGTTTTGGGGAACATGGCATGTGTGACAACCAAGAGCACTAGTCCACCCAGAAAGTGCTTGTTTCCTTGGCTAGCTGGGGGCTTTTCTATGAGTGTAACATGGACTTACATCATTGCTGAAGAACTTGTTTCCCTCTTGGTTGCACTTGGGAATGTCATAGGGGTTAGTCCTTCAATCCTTGGACTAACTGTCCTAGCTTGGGGTAATTCTCTAGGGGATTTGATAGCCAATGGTGCAATGGCCAAGAATGGTGGAGCTGATGGGGCCCAAATAGCTGTCTCTGGTTGTTATGCAGGCCCTATGTTTAACATTTTGATGGGCTTGGGCTTGCCTCTTGTACTCTCAGCATGGTCTGAATACCCAGAGTCTTATGTGATTCCCAAGGACCCTTCTCTTTATGCAACACTTTTATTCTTGATGGGAGGGGTGCTTTGGGCCCTTGTGATATTGACAAAAAAGAATATGAAGCTTGATAAGTCATTGGGAATTGGGCTCTTGACAATTTACCTCTGCTTTTTGTTTATAAGGATGGTCATTGCAATTGGTGTTATTAAACTCTAG 1740 0.4207 MARFIYNTKPLHRKLLLLNISFIFLIFLFLSAYLHPSTSNVHASTNVFNRARMLTDISVDGCTDLHKYLDNDSKCLYVKSHVHCRSKGYINYLQIFYCSFGHSPVLGHALLILWLVILFYLLGDTASNYFCSNLEGLSDILRLSPTIAGVTLLSLGNGAPDFFASVVSFTSSNDGAVGLNSILGGAFFVSSAVLGIISFLVSSNETAVDKASFIRDVIFFLFSLFILLVIISIGKISLLGSIFYVSIYFLYVCAVSATHFIYGEDRTEGELVSSSDDLTESGIPLLGCVDDEKPNVSNKEVIEEEGDKQEGFGNDSFDLTYLTKFVHVLELPLSLPRRLTIPVVSEEGWSKPYAVISVTLAPVLFAALCNTQMENGSSRSSLVSYLTAALIGIVLGNMACVTTKSTSPPRKCLFPWLAGGFSMSVTWTYIIAEELVSLLVALGNVIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGADGAQIAVSGCYAGPMFNILMGLGLPLVLSAWSEYPESYVIPKDPSLYATLLFLMGGVLWALVILTKKNMKLDKSLGIGLLTIYLCFLFIRMVIAIGVIKL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0540 579 Pfam Sodium/calcium exchanger protein 113 254 IPR004837 GO:0016021|GO:0055085
Pvu4g0540 579 Pfam Sodium/calcium exchanger protein 417 570 IPR004837 GO:0016021|GO:0055085
Pvu4g0540 579 Gene3D - 354 572 IPR044880 -
Pvu4g0540 579 Gene3D - 143 273 IPR044880 -
Pvu4g0540 579 PANTHER CATION/CALCIUM EXCHANGER 1 13 579 - -
Pvu4g0540 579 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 13 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0540 Pvu-Chr4 5813708 5815447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0540 60 577 Antiporters AT5G17860 52.672 9.09e-177 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0540 K13754 - gmx:100818583 968.378