Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2961 ATGGTGCCACCAGAAGGCATGCCGCCACCAACACCCAAAGACCATGAGGTCACTGAGGGCCGCAAAACGACCAGGCCAGCGCCCGAACAAGGTGTCAAGTGCCCCAGATGTGACTCACCCAACACCAAGTTCTGCTACTACAACAACTACAGCCTAACTCAGCCCAGGCACTTCTGCAAGACGTGCAGGAGGTACTGGACCAACGGTGGCGCCTTGCGGAACGTCCCAATAGGAGGTGGTTGCCGGAAGAACAAAAAGGTGAAACCTTCTTCCTCCTCTTCTTCATCCTCCTCCAAAGACTTCAATTTTCATGGTCTCACAGTTCCACCTTCCGTTGACTTTAACCTCGGAGGGTTGCCCTTTCCCTCCAGGCTCACTACTTTCAACACTCAACAACACCTCCCAGCACCCCCCTTCAACCAGTTCTCTTCCTTTGGGGACGTTGCGTCATCTTCAACCACTTCTCTTTCTGCTTTCTCTGCCTTCCAAGACCCCCCTGCTGCTGTTTCGAACCCTCTCTTGGGTCTTGTTCCGCCCAGCCCTGACCTCTGGGCACCACGTAGGTCCGAAAGGGCCTCGCTGTCTGATCCACTGAACAGTGCAATGCAAACCCTGCAGACCATGGAAGCCATGAACGTTCACAGCAGCCTGGCCTCTTCAATCGAGTCGCTGAGCAACATCAACCAGGATTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGCGAGAGAAGCGTTGCGATGAATGGTTTTGGGAATCAGAAGGTTTCGTCTTCGAAGCCAGAGAACTTGCCAGCTGTCAGTTCCATAAATGGAGGCCCAAGTGGGGAGACAGTTACTGCAGCATCCACCGAATGGTTCTTCGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACAAGCAATGGTGCTGCCAATGTTAACCACATTAGCAACGATCCAAACAACAACTGGTCTAGTGCCCTTGCCTGGGGAGATTTGCAGCACCAACCATACACCGCTTTGCCCTAG 1038 0.5366 MVPPEGMPPPTPKDHEVTEGRKTTRPAPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSSSSSSSKDFNFHGLTVPPSVDFNLGGLPFPSRLTTFNTQQHLPAPPFNQFSSFGDVASSSTTSLSAFSAFQDPPAAVSNPLLGLVPPSPDLWAPRRSERASLSDPLNSAMQTLQTMEAMNVHSSLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGERSVAMNGFGNQKVSSSKPENLPAVSSINGGPSGETVTAASTEWFFGNSFPSVSPSTSNGAANVNHISNDPNNNWSSALAWGDLQHQPYTALP* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2961 345 MobiDBLite consensus disorder prediction 86 102 - -
Pvu3g2961 345 MobiDBLite consensus disorder prediction 77 102 - -
Pvu3g2961 345 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Pvu3g2961 345 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Pvu3g2961 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 318 IPR045174 GO:0003700|GO:0006355
Pvu3g2961 345 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Pvu3g2961 345 MobiDBLite consensus disorder prediction 1 33 - -
Pvu3g2961 345 PANTHER DOF ZINC FINGER PROTEIN DOF5.7 22 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2961 Pvu-Chr3 51349107 51350494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2961 8 345 C2C2-Dof Transcription Factor Family AT5G65590 36.757 7.77e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g2961 zf-Dof 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2961 - - gmx:102663483 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1494 2 28149833 28151588 Pvu3g2961 3 51349107 51350494 PCT