Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2838 ATGTCCCAAGATAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCAAAACACTCATATTCCCATTAAGCCTACTACTCCATTCACAGATTTACACTCATTGACTCAGATTCAGCCTCTGCCTCAACCCATCATCATCATCATGAATGGACTTGAAGAATCAACTAATTATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTCTAGCAAACTGACTGAGCCTCAAGAAGATGGTAGTGATACTCCAAGAAACATATGTAAAAATCCTTCACTGAAACTGGTGACCAAAGTAGTTCATAGGACTAATGACCACAGGAATCCTAAAAGAAATATTGATGAAGAAAAAGTTTTGAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACTGCTGGAGGGGCAATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAACAAGCACTCAGCTCTGCTGTATTGTCAGAAACCTGTGACTCCTGATGGTGCATCTGCCATCCAGACACATTCCAGTGCTTCTAGTGATGATATGATTCTCTCATCCAATGAACTCTCTGTGACTTCAAGACCTATCAAAGAAAGGGAGGAAACTCCTCTTAGTGAATCCTTAGAAACTGTTTTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACTTTTCCACTATCAAAGATGATGGTGAGGACCCTTCAAGCAACTCTATTAGATCTGATGAGATAGAGCAGGTTGGTTTGGCACAACACTCTAATGGTTTAATTCCCTTACATCCATTTCATTATCATTCTGTCCCTTCATGGTCTTATCAATGGAATCCATGCTGGAATGTGAAGGAGTTTAGGTCCAGTAGCACTAGTTCTAGTCTTCCTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGGCTTCTCCATACCAACAGTAATGCTACCTGCAGCACCTTATTCGTATTCAGGTTTCATGTCAAGCTTAGCTGGTCAAAAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCTGTTAGCATCAGTACTAGTTCTGGTGATAGATCCCCAACCTTGGGAAAGCATTCTAGAGATGGAAGCACACCGAAGGAAGCTGCAATGAAACAGAATCTTTGGGTGCCTAAGACTGTTAGAATTAATGGCCCAGAAGAGGCTGCAAACAGTTCTATATGGACAACTTTGGGAAGAAAATCTGATCAGAGCAAAATCATTATAAAAGGAAGTGTCTTCAAATCGTTTGAATCTAAGACAAGTGCTGATCATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGCTCTGAATCTTTTCAGGAAAGCTTGTGA 1443 0.404 MSQDRDSAIKLFGADIQNTHIPIKPTTPFTDLHSLTQIQPLPQPIIIIMNGLEESTNYEVDVPLNEEVSSKLTEPQEDGSDTPRNICKNPSLKLVTKVVHRTNDHRNPKRNIDEEKVLKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSALLYCQKPVTPDGASAIQTHSSASSDDMILSSNELSVTSRPIKEREETPLSESLETVLSLNGQRKFDVDFSTIKDDGEDPSSNSIRSDEIEQVGLAQHSNGLIPLHPFHYHSVPSWSYQWNPCWNVKEFRSSSTSSSLPYTGSPTMMAVSGFSIPTVMLPAAPYSYSGFMSSLAGQKEESSLIGSAFSGISLSSSSVSISTSSGDRSPTLGKHSRDGSTPKEAAMKQNLWVPKTVRINGPEEAANSSIWTTLGRKSDQSKIIIKGSVFKSFESKTSADHNQIRRTNPAAFSRSESFQESL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2838 480 PANTHER CYCLIC DOF FACTOR 2 48 480 IPR045174 GO:0003700|GO:0006355
Pvu3g2838 480 MobiDBLite consensus disorder prediction 378 405 - -
Pvu3g2838 480 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Pvu3g2838 480 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Pvu3g2838 480 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Pvu3g2838 480 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 48 480 - -
Pvu3g2838 480 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2838 Pvu-Chr3 50194801 50197838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2838 114 479 C2C2-Dof Transcription Factor Family AT5G39660 36.154 1.48e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g2838 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2838 - - vun:114177215 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2838 3 50194801 50197838 Pvu3g2838 3 50194801 50197838 ECH