Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2678 ATGCAAAACAACACACCTTCAACTTCAATTATGCGAACGCTTTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCCCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGCAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTCTGCTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGGACACACGAAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTAAGTCAGAAAACCCAGCTTCACAGCCTCTGGATCCAGGTGAGACTAAAAGAGGACAAAATGCACTGCCCAAAATAAAAATGGGAGAGAAACAGCAAAATTACAGGATGCCTCTGATTCTGACGCCAGAACCCAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAGCATCAAATAATCAGCAATAA 585 0.4581 MQNNTPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHARVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNYRMPLILTPEPNADEHAMMGTKMIDLNMKPQRIHEPASNNQQ* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2678 194 CDD Bbox1_BBX-like 14 57 - -
Pvu3g2678 194 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Pvu3g2678 194 MobiDBLite consensus disorder prediction 113 148 - -
Pvu3g2678 194 Pfam B-box zinc finger 13 52 IPR000315 GO:0008270
Pvu3g2678 194 Pfam B-box zinc finger 62 102 IPR000315 GO:0008270
Pvu3g2678 194 PANTHER B-BOX ZINC FINGER PROTEIN 22 11 193 - -
Pvu3g2678 194 CDD Bbox1_BBX-like 66 106 - -
Pvu3g2678 194 ProSiteProfiles Zinc finger B-box type profile. 61 106 IPR000315 GO:0008270
Pvu3g2678 194 SMART bboxneu5 10 57 IPR000315 GO:0008270
Pvu3g2678 194 SMART bboxneu5 61 106 IPR000315 GO:0008270
Pvu3g2678 194 PANTHER SALT TOLERANCE-LIKE PROTEIN 11 193 - -
Pvu3g2678 194 Gene3D Classic Zinc Finger 11 105 - -
Pvu3g2678 194 SUPERFAMILY B-box zinc-binding domain 58 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2678 Pvu-Chr3 48801087 48803925 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu3g2678 zf-B_box 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2678 3 48801087 48803925 Pvu2g1150 2 22653997 22656628 ECH
Pvu3g2678 3 48801087 48803925 Pvu3g2678 3 48801087 48803925 ECH
Pvu9g0044 9 811932 813556 Pvu3g2678 3 48801087 48803925 ECH
Pvu11g0419 11 3531452 3533541 Pvu3g2678 3 48801087 48803925 ECH
Pvu2g1150 2 22653997 22656628 Pvu3g2678 3 48801087 48803925 PCT