Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2557 ATGCCATCGTCCAACTCCGGCGAGAGCCGCCGATCGGCCAAGCCCCAGAGCTCTGCCGGAGCGCCGCCACCGCCGGAGCAAGAGAACCTCCCCTGCCCCCGTTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCCTGTCGCCGGTACTGGACCCATGGCGGCACACTCCGCGACATCCCCGTCGGCGGTGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACACTGCCACATCCTCCTCCTCCTCCACCATGACGTCACCTCAGGAGCACGCTTTACCCGCATTGGCCCCTGTCCCAACGACCCAAGGAGGGTCCATGCACTTCATGGACGGGGACGTTAATAAACAGAATAACGTTAATGTTTGCGGGAGCTTCACTTCGTTGCTGAACAACACCCAGGGCAACAATGGGTTTCTCGCCCTCGGCGGGTTTGGGCTTGGGCTTGGACACGGGTTCGAGGACATGGGCTTTGGGATTGGCAGGTCAGGCTGGGGCTTCCCCGGAATGGTGGATGGTGCCAACATTGGCGGCGCCGTTCCGTCTTCTGGATTGAGCACGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTTGTTAGTGGAGACTGTTTCTCGTGGCCTGGGCTTGCAATTTCCACACCGGGGAATGGTCTCAAATGA 702 0.604 MPSSNSGESRRSAKPQSSAGAPPPPEQENLPCPRCESTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHTATSSSSSTMTSPQEHALPALAPVPTTQGGSMHFMDGDVNKQNNVNVCGSFTSLLNNTQGNNGFLALGGFGLGLGHGFEDMGFGIGRSGWGFPGMVDGANIGGAVPSSGLSTWQLESGEGGFVSGDCFSWPGLAISTPGNGLK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2557 233 MobiDBLite consensus disorder prediction 71 126 - -
Pvu3g2557 233 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Pvu3g2557 233 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 230 IPR045174 GO:0003700|GO:0006355
Pvu3g2557 233 MobiDBLite consensus disorder prediction 1 16 - -
Pvu3g2557 233 MobiDBLite consensus disorder prediction 1 32 - -
Pvu3g2557 233 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Pvu3g2557 233 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 230 - -
Pvu3g2557 233 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Pvu3g2557 233 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2557 Pvu-Chr3 47458824 47459525 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2557 1 233 C2C2-Dof Transcription Factor Family AT3G50410 50.588 6.64e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g2557 zf-Dof 9.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2557 - - gmx:778095 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2557 3 47458824 47459525 Pvu3g2557 3 47458824 47459525 ECH