Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2551 ATGATCCAAGAACTGTTGGGTGGAGCTGGCCTCTTAGCAGGAGAAAGAAAACCCTCCATTAATGGTGGGGGAGGTGGAGGAGTTCTACTCCCAACTACACCATCTTCCTCTTCTCTTCCTTCTACAGCAACTAATAATGTTACCCTCACATCCACCACCACAACTACCACTACTGCCACCACCACCACCACTCCCACGTCCGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCGCGCCACTTCTGCAAGACGTGCCGTCGCTACTGGACTAAAGGTGGCGCTCTCCGAAACGTTCCCATCGGCGGTGGCTGCCGGAAAAACAAGAACATCGGCGTGGCGAACTCGGTGGCAAAGACAGCTTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTGCTGAGAGCTACTCAAAACCAAAACCCTAACCCTAACCCTACTCCCATGTCCATCAAGGAAGAAGGGACCCTGATGGGCCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAACCTTAGACTATGATGCGGTTGCGCAAGTTCCGTCGCTTGGTCTGTTTGGGAGAAGCCATCAAGATCAACAACAAAATGGGGGGTTCCTACTTGGGGAACACCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCAGTGATAACTCCTCACAAATGTTTATGGGAAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAGACAACTTCGGTTGCTGGGGGTGAATTCGGATACTGGAACGGTCCAACCTTTTCCTGGTCTGATCTTCCAACAACGAATGGCGCTGGTGCATATCCGTGA 1017 0.5025 MIQELLGGAGLLAGERKPSINGGGGGGVLLPTTPSSSSLPSTATNNVTLTSTTTTTTTATTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPTPMSIKEEGTLMGHMVSTEPLVSNALLNHRTLDYDAVAQVPSLGLFGRSHQDQQQNGGFLLGEHHNSGIQELYQKLRSSSANNYCSDNSSQMFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAGAYP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2551 338 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Pvu3g2551 338 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Pvu3g2551 338 Pfam Dof domain, zinc finger 70 126 IPR003851 GO:0003677|GO:0006355
Pvu3g2551 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 334 IPR045174 GO:0003700|GO:0006355
Pvu3g2551 338 MobiDBLite consensus disorder prediction 13 71 - -
Pvu3g2551 338 MobiDBLite consensus disorder prediction 30 71 - -
Pvu3g2551 338 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 18 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2551 Pvu-Chr3 47381617 47383283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2551 41 157 C2C2-Dof Transcription Factor Family AT5G60200 53.333 5.46e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g2551 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2551 - - vra:106766838 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0224 2 2381355 2382917 Pvu3g2551 3 47381617 47383283 PCT