Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2478 ATGCCTTCAATGCTGATACCCACCTTGCTCCTCCTTTCCTTCACGTTCTCACATGCCACCGCCATCTCCATCATCAATTACTCCGAAAACGAGGTCATGGACATGTACGAGGAGTGGTTGATGAAGCACCGGAAGGTGTACAATGGGTTGGATGAGAAGGAAAAGAGGTTTCAAGTGTTCAAGGACAACCTAGGATTCATACAAGACCACAACGCTCAGAACAACACATACACACTTGGGTTGAACAAATTTGCTGATATCACCAATGAGGAATACCGTGCCATGTATTTGGGCACCAGAACTGATGCCAAACGCAGGGTCATGAAAACCCAGAACACCGGTCACCGCTATGCTTACAACTCCGGCTACCAGTTGCCGGTGCATGTGGATTGGAGGTTGAAAGGTGCAGTTGGTCCAATCAAAGATCAGGGAAATTGTGGAAGTTGTTGGGCGTTCTCAACAGTGGCTGCTGTGGAAGGTATAAATAACATAGTTACAGGGGAGTTTGTGTCCCTATCAGAACAAGAGCTTGTGGACTGTGACAGAGAGTATGATGAAGGATGCAACGGTGGCCTCATGGACTACGCATTCCAGTTCATCATTCAAAATGGTGGCATAGACACAGAAGAAGATTATCCATACCAGGGCATTGATGGAACTTGTGATCAAACTAAGAAAAAGACCAAGGTAGTGCAAATTGATGGTTACGAGGATGTTCCATCAAATAACGAGAATGCCTTAAAGAAAGCTGTTTCTCATCAACCCGTAAGCGTTGCTATTGAAGCCTCTGGCAGGGCTTTGCAACTTTATCAATCTGGTGTGTTTACTGGTAAATGTGGAACAGCGTTAGATCATGGTGTGGTGGTTGTTGGATATGGGACTGAAAATGGTGTGGATTACTGGCTGGTGAGGAATTCATGGGGCACTGGATGGGGTGAGGATGGCTATTTCAAGATGGAGCGCAACGTGAGAAGCACCTCAGAAGGGAAGTGTGGAATTGCAATGGACTGTTCCTACCCTGTTAAGTATGGTCTAAACTCTGCAGTTCCTAGTTCAGTTTATGAAAGCACTGAGGCATCTATTAGCAGTGCTTGA 1095 0.4594 MPSMLIPTLLLLSFTFSHATAISIINYSENEVMDMYEEWLMKHRKVYNGLDEKEKRFQVFKDNLGFIQDHNAQNNTYTLGLNKFADITNEEYRAMYLGTRTDAKRRVMKTQNTGHRYAYNSGYQLPVHVDWRLKGAVGPIKDQGNCGSCWAFSTVAAVEGINNIVTGEFVSLSEQELVDCDREYDEGCNGGLMDYAFQFIIQNGGIDTEEDYPYQGIDGTCDQTKKKTKVVQIDGYEDVPSNNENALKKAVSHQPVSVAIEASGRALQLYQSGVFTGKCGTALDHGVVVVGYGTENGVDYWLVRNSWGTGWGEDGYFKMERNVRSTSEGKCGIAMDCSYPVKYGLNSAVPSSVYESTEASISSA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2478 364 Gene3D Cysteine proteinases 22 343 - -
Pvu3g2478 364 SMART Inhibitor_I29_2 36 92 IPR013201 -
Pvu3g2478 364 Pfam Cathepsin propeptide inhibitor domain (I29) 36 92 IPR013201 -
Pvu3g2478 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Pvu3g2478 364 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Pvu3g2478 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Pvu3g2478 364 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Pvu3g2478 364 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Pvu3g2478 364 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Pvu3g2478 364 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Pvu3g2478 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 349 - -
Pvu3g2478 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Pvu3g2478 364 CDD Peptidase_C1A 126 340 IPR039417 -
Pvu3g2478 364 PANTHER CYSTEINE PROTEASE 24 349 - -
Pvu3g2478 364 SUPERFAMILY Cysteine proteinases 28 341 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2478 Pvu-Chr3 46396634 46399229 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0693 9 11521263 11523831 Pvu3g2478 3 46396634 46399229 ECH
Pvu1g0250 1 2190319 2194581 Pvu3g2478 3 46396634 46399229 ECH
Pvu3g2478 3 46396634 46399229 Pvu3g2478 3 46396634 46399229 ECH